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CAZyme Information: PITG_10880-t26_1-p1

You are here: Home > Sequence: PITG_10880-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora infestans
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans
CAZyme ID PITG_10880-t26_1-p1
CAZy Family GH37
CAZyme Description polygalacturonase, putative
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
418 44926.96 6.5652
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PinfestansT30-4 19344 403677 1547 17797
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.15:10

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 128 409 2.9e-45 0.916923076923077

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 5.94e-57 130 408 1 303
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
215426 PLN02793 1.07e-21 180 385 143 368
Probable polygalacturonase
215540 PLN03010 8.18e-19 182 394 141 357
polygalacturonase
215120 PLN02188 6.61e-17 180 385 122 348
polygalacturonase/glycoside hydrolase family protein
177865 PLN02218 1.55e-16 180 385 156 382
polygalacturonase ADPG

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
6.81e-188 1 409 1 418
3.62e-171 99 409 22 350
3.99e-167 1 409 1 436
4.60e-166 1 409 1 436
1.31e-165 1 409 1 436

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.20e-50 115 409 11 327
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
1.64e-49 115 384 3 291
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
2.80e-49 115 409 11 327
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
5.11e-48 128 409 20 322
Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus]
9.29e-48 115 409 3 319
Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_B Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_C Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_D Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_E Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_F Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7.57e-53 112 409 32 351
Probable endopolygalacturonase I OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pgaI PE=3 SV=1
8.14e-51 128 384 62 338
Endo-polygalacturonase OS=Sclerotinia sclerotiorum OX=5180 GN=PG1 PE=3 SV=1
6.76e-49 115 409 35 351
Probable endopolygalacturonase A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pgaA PE=3 SV=1
8.18e-49 97 409 10 343
Probable endopolygalacturonase B OS=Aspergillus kawachii OX=1069201 GN=pgaB PE=3 SV=1
8.18e-49 107 409 20 343
Endopolygalacturonase B OS=Aspergillus niger OX=5061 GN=pgaB PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000211 0.999774 CS pos: 19-20. Pr: 0.9623

TMHMM  Annotations      help

There is no transmembrane helices in PITG_10880-t26_1-p1.