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CAZyme Information: PITG_08561-t26_1-p1

You are here: Home > Sequence: PITG_08561-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora infestans
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans
CAZyme ID PITG_08561-t26_1-p1
CAZy Family GH17
CAZyme Description pectin lyase, putative
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
215 22471.15 7.0236
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PinfestansT30-4 19344 403677 1547 17797
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 16 206 6.6e-80 0.983957219251337

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 6.06e-34 15 205 1 186
Amb_all domain.
226384 PelB 4.45e-13 13 205 84 273
Pectate lyase [Carbohydrate transport and metabolism].
366158 Pec_lyase_C 1.58e-12 1 205 4 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
5.31e-142 1 207 115 321
2.18e-117 7 207 120 318
1.35e-108 5 207 278 478
1.16e-101 1 187 110 296
5.07e-82 1 205 110 315

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.00e-58 14 205 92 276
Pectin Lyase B [Aspergillus niger]
1.96e-55 13 205 91 276
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
1.54e-54 13 205 91 276
Pectin Lyase A [Aspergillus niger]
1.42e-09 1 205 50 276
Chain A, PECTATE LYASE E [Dickeya chrysanthemi]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.64e-66 13 213 111 304
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
1.26e-65 17 207 116 299
Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
1.26e-65 17 207 116 299
Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
1.99e-65 13 212 110 302
Pectin lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelB PE=2 SV=1
2.17e-64 9 212 105 301
Probable pectin lyase A OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=pelA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000026 0.000016

TMHMM  Annotations      help

There is no transmembrane helices in PITG_08561-t26_1-p1.