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CAZyme Information: PITG_08555-t26_1-p1

You are here: Home > Sequence: PITG_08555-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora infestans
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans
CAZyme ID PITG_08555-t26_1-p1
CAZy Family GH17
CAZyme Description pectin lyase, putative
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
274 28826.56 7.3881
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PinfestansT30-4 19344 403677 1547 17797
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 122 273 1e-61 0.786096256684492

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 2.18e-25 122 230 1 113
Amb_all domain.
226384 PelB 2.35e-12 32 228 41 195
Pectate lyase [Carbohydrate transport and metabolism].
366158 Pec_lyase_C 3.40e-06 126 233 23 139
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
6.11e-159 13 274 16 278
3.83e-130 26 274 190 438
6.94e-129 14 274 11 281
1.01e-120 14 274 7 276
1.17e-97 29 274 24 278

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.54e-71 26 274 1 242
Pectin Lyase B [Aspergillus niger]
6.17e-60 28 272 3 240
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
1.92e-58 28 272 3 240
Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.71e-75 25 274 21 263
Pectin lyase OS=Colletotrichum gloeosporioides OX=474922 GN=PNLA PE=3 SV=1
1.94e-74 16 273 7 261
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
8.10e-74 16 274 10 261
Pectin lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelB PE=2 SV=1
1.45e-71 23 274 18 262
Probable pectin lyase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelB PE=3 SV=1
1.97e-70 21 273 11 256
Probable pectin lyase E OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pelE PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000344 0.999659 CS pos: 25-26. Pr: 0.9646

TMHMM  Annotations      help

There is no transmembrane helices in PITG_08555-t26_1-p1.