CAZyme Information: PITG_04668-t26_1-p1

Basic Information

• Species: Phytophthora infestans
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans
• CAZyme ID: PITG_04668-t26_1-p1
• CAZy Family: GH10
• CAZyme Description: polysaccharide lyase, putative

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
293		30728.14	9.7311

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PinfestansT30-4	19344	403677	1547	17797

• Gene Location: location=DS028123:2043154-2044132(+)

Full Sequence      

MKRLLALLVASCAFAAQAMETLEMSDDVTFDSVVFSGESRKLAVDTTTFPEDYKPGEVMA
AQDEERAAGVWPTSKGMVPLTRPRTVGPSTPFDGGMKTFKRSNVAFRSGAKMTRANAVFV
VQAGGTLSNVIIAGGGGVFCETHNCALVNVWFKDSVQGALHVNSGTGITTITGGGARNVA
RRVIFAQASGTVVVSGGFYMVNSGRLFESCGTCGPVKRGVIVDGVVSVNPTAELIRMNSN
YNDRGTISKATITTSMTNYPVCTRFNGGATPRKLGNGAAPPVCAYSRAAVTIR

Enzyme Prediction     

EC	4.2.2.2:4

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL3	75	267	2.4e-38	0.9896907216494846

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
397360	Pectate_lyase	5.75e-34	68	267	1	195	Pectate lyase.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ26062.1|PL3_2	8.22e-106	1	293	1	281
ADN18841.1|PL3_2	3.94e-42	69	292	24	252
ADN18840.1|PL3_2	1.41e-40	56	291	21	259
ADN18837.1|PL3_2	2.35e-38	60	290	22	258
ADN18836.1|PL3_2	2.05e-31	68	248	19	202

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3B90_A	1.68e-07	120	291	36	224	Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B90_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]
3B4N_A	3.14e-07	120	291	154	342	Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B4N_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_A Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q0CJ20|PLYG_ASPTN	7.24e-31	72	267	28	219	Probable pectate lyase G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyG PE=3 SV=1
sp|Q5BA88|PLYD_EMENI	1.50e-30	72	286	43	258	Probable pectate lyase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyD PE=3 SV=1
sp|A1C4B8|PLYE_ASPCL	6.72e-29	46	287	13	249	Probable pectate lyase E OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=plyE PE=3 SV=1
sp|Q0CJ49|PLYD_ASPTN	9.18e-29	72	286	35	247	Probable pectate lyase D OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyD PE=3 SV=1
sp|Q5ATC7|PLYH_EMENI	5.90e-27	72	267	41	232	Pectate lyase H OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyH PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000420	0.999556	CS pos: 18-19. Pr: 0.9558

TMHMM  Annotations     

There is no transmembrane helices in PITG_04668-t26_1-p1.