CAZyme Information: PITG_03357-t26_1-p1

Basic Information

• Species: Phytophthora infestans
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans
• CAZyme ID: PITG_03357-t26_1-p1
• CAZy Family: CE2
• CAZyme Description: conserved hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
496		54239.88	5.3207

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PinfestansT30-4	19344	403677	1547	17797

• Gene Location: location=DS028121:1505021-1506511(-)

Full Sequence      

MLTVQSLGAVALAYVFVLSLPLQVTAKDYTVKADASTTLVDTWEGWGTSLCWWANAFGDR
EDIADLLFTQKDTVTLKGRSSGLPALGFNIARYNVGGSSRNVIDDGGTEIAMKNSPNMPA
FKFIESFWLDWSSNETSSKSWDWDVDVKQRKMLELATQRDATLTEAFSNSPPWWMNSNHA
TAGGESGTKDNLQTWNRGQFALYMATVVKHAKESWGINFTYVEPFNEPMSSWWQYPGGQE
GCHFDVATQKDVLVKLRTKLDHFGLQDVAISSSDENSNTQTLATLTDMSKDADVMATIGK
INTHGYGNRASDRAPLKELVKKVKKKFWDSEYGEKDATGLSLAQGVANNINEMGVSAFVY
WQPFDGGGWGLINSAPGNMTIDTPNPKYYALAQYSRHIRPGMTILSTDDLNTVMAYDAKT
KLLVLATVNAGNAVSKVTYDLASFKSVGGPASAWTTETSGKGALYKTSKVELSRSTFSAS
IPAASVTTFEIEGVAL

Enzyme Prediction     

EC	3.2.1.164:3

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH30	40	489	2e-135	0.9802631578947368

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
405300	Glyco_hydr_30_2	1.23e-15	30	241	3	195	O-Glycosyl hydrolase family 30.
227807	XynC	4.59e-09	170	489	124	426	O-Glycosyl hydrolase [Cell wall/membrane/envelope biogenesis].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ26121.1|GH30_5	2.58e-231	3	492	4	497
ATB44315.1|GH30_5	1.04e-148	28	494	33	497
BDI32354.1|GH30_5	9.03e-144	28	494	28	495
QRN98147.1|GH30_5	1.17e-142	28	494	34	498
ADO68177.1|GH30_5	2.67e-141	28	494	34	498

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6IUJ_A	2.31e-08	87	492	76	472	Chain A, GH30 Xylanase B [Talaromyces cellulolyticus CF-2612],6IUJ_B Chain B, GH30 Xylanase B [Talaromyces cellulolyticus CF-2612]
6KRL_A	2.56e-08	87	492	147	543	Crystal structure of GH30 xylanase B from Talaromyces cellulolyticus expressed by Pichia pastoris [Saccharomyces uvarum],6KRN_A Crystal structure of GH30 xylanase B from Talaromyces cellulolyticus expressed by Pichia pastoris in complex with aldotriuronic acid [Saccharomyces uvarum]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q76FP5|6GAL_HYPRU	3.66e-125	29	496	14	478	Endo-beta-1,6-galactanase OS=Hypocrea rufa OX=5547 GN=6GAL PE=1 SV=1
sp|A0A401ETL2|EXGAL_BIFL2	3.00e-17	5	362	6	442	Exo-beta-1,6-galactobiohydrolase OS=Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) OX=565042 GN=bl1,6Gal PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000338	0.999655	CS pos: 26-27. Pr: 0.9747

TMHMM  Annotations     

There is no transmembrane helices in PITG_03357-t26_1-p1.