CAZyme Information: PITG_03136-t26_1-p1

Basic Information

• Species: Phytophthora infestans
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans
• CAZyme ID: PITG_03136-t26_1-p1
• CAZy Family: CBM13|CBM13
• CAZyme Description: glycoside hydrolase, putative

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
790		86790.05	4.5041

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PinfestansT30-4	19344	403677	1547	17797

• Gene Location: location=DS028121:648263-650635(-)

Full Sequence      

MVKLFLAAAYSAVVTAILSLPATVSATNAATAAAEDMVFDAKAQSIVDGFSIAQVIGQMT
QVDISTVMNPKDNTLNEDWVRLYAQQYVGSYLNTIWDEPKEKKYGWTASEFRSVVKRIQE
ISMEENGGHPIIYGLDSVHGANYVEGAVIFPHQINGGASFNPDLVYEAGRITARDTQAAG
IPWIFGPILEISQNPLWSRTYETFGEDPYLASVMGDAIVRGLQSYNQSAACMKHFIGYSK
TATGHDRDNVVMADFDLLNYFLPPFKAAMEAGAMSTMENYISINGEPVIANSRILNDLLR
SDLGFDGLLVSDWAEINNLKDWHRVVNSYEDAVALSLKQTSLDMSMVPNDTKFIDYTQSM
LEKHPEHEARLRQSAKRIIKTKLKLGLYDNPVPGENFVSMVGSEEDKTAALNMARESIVL
LKNAEDVLPLPKNASVFLTGHSANNVGYQCGGWSKAWQGYSGNEMFPNGVTVRQGFENLV
GNESFTYFNGLLANGSITDEDLATAESYASQHEYTVVVIGEPNYTEKPGDIDNLELPEGQ
IKYIEALRATDTKMIVVLFEGRPRLLGSIPDHSMAIIDGLLPCELGGQAMAEIIYGEVNP
SGRLPITYPKDPANVAIPYNHLVTTRCAWDNCWQQWDFGSGLSYTQFNYSAVTLDTTLLS
SASETVTATVTVTNVGARAGKETVMLFVIQPYRLISVPEVKQLKKFKKIELQAGESMDVS
FTLTTDDLSVYDPQLGKGLKRVFEDSDYVVAIKPETWCNVYNNITHPLCAEFSVDTSSGG
GTVNVGSGLL

Enzyme Prediction     

EC	3.2.1.21:1

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	125	335	1.3e-63	0.9259259259259259

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
185053	PRK15098	1.90e-105	51	752	46	750	beta-glucosidase BglX.
224389	BglX	1.13e-72	127	454	58	372	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
178629	PLN03080	1.16e-59	144	737	108	756	Probable beta-xylosidase; Provisional
395747	Glyco_hydro_3	1.21e-55	56	379	6	314	Glycosyl hydrolase family 3 N terminal domain.
396478	Glyco_hydro_3_C	2.29e-43	418	644	1	216	Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ29009.1|GH3	0.0	35	784	22	772
UIZ29613.1|GH3	0.0	1	777	46	822
UIZ29432.1|GH3	0.0	1	777	1	766
UIZ27116.1|GH3	1.13e-284	59	774	1	724
CCA27737.1|GH3	8.82e-278	42	774	67	808

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5JP0_A	1.16e-121	51	768	25	765	Bacteroides ovatus Xyloglucan PUL GH3B with bound glucose [Bacteroides ovatus],5JP0_B Bacteroides ovatus Xyloglucan PUL GH3B with bound glucose [Bacteroides ovatus]
6R5I_A	2.50e-83	45	735	9	705	Chain A, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5I_B Chain B, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5N_A Chain A, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5N_B Chain B, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1]
6R5O_A	1.29e-82	45	735	9	705	Chain A, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5O_B Chain B, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5R_B Chain B, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5T_A Chain A, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5T_B Chain B, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5U_A Chain A, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5U_B Chain B, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5V_A Chain A, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5V_B Chain B, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1]
6R5R_A	1.31e-82	45	735	10	706	Chain A, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1]
6R5P_A	2.44e-82	45	735	41	737	Chain A, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1],6R5P_B Chain B, Periplasmic beta-glucosidase [Pseudomonas aeruginosa PAO1]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q23892|GLUA_DICDI	1.33e-136	40	752	77	811	Lysosomal beta glucosidase OS=Dictyostelium discoideum OX=44689 GN=gluA PE=1 SV=2
sp|A7LXU3|BGH3B_BACO1	1.68e-120	51	729	47	742	Beta-glucosidase BoGH3B OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / BCRC 10623 / CCUG 4943 / NCTC 11153) OX=411476 GN=BACOVA_02659 PE=1 SV=1
sp|Q56078|BGLX_SALTY	3.40e-82	40	735	35	737	Periplasmic beta-glucosidase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=bglX PE=3 SV=2
sp|P33363|BGLX_ECOLI	2.41e-81	40	735	35	737	Periplasmic beta-glucosidase OS=Escherichia coli (strain K12) OX=83333 GN=bglX PE=3 SV=2
sp|T2KMH0|PLH24_FORAG	1.03e-80	97	752	30	706	Beta-xylosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22130 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000244	0.999719	CS pos: 26-27. Pr: 0.9823

TMHMM  Annotations     

There is no transmembrane helices in PITG_03136-t26_1-p1.