logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: PITG_01760-t26_1-p1

You are here: Home > Sequence: PITG_01760-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora infestans
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans
CAZyme ID PITG_01760-t26_1-p1
CAZy Family AA17
CAZyme Description glycoside hydrolase, putative
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
679 74387.84 4.1340
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PinfestansT30-4 19344 403677 1547 17797
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PITG_01760-t26_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH78 342 663 1.6e-33 0.5892857142857143

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
407469 Bac_rhamnosid6H 1.05e-04 471 673 113 311
Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
225942 GDB1 0.003 437 658 321 568
Glycogen debranching enzyme (alpha-1,6-glucosidase) [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.53e-125 6 674 19 711
4.90e-124 19 674 51 735
1.60e-116 17 674 26 706
1.60e-116 17 674 26 706
1.60e-116 17 674 26 706

PDB Hits      help

PITG_01760-t26_1-p1 has no PDB hit.

Swiss-Prot Hits      help

PITG_01760-t26_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000045 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in PITG_01760-t26_1-p1.