CAZyme Information: PITG_00872-t26_1-p1

Basic Information

• Species: Phytophthora infestans
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora infestans
• CAZyme ID: PITG_00872-t26_1-p1
• CAZy Family: AA16
• CAZyme Description: pectin lyase, putative

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
515		54899.63	5.6931

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PinfestansT30-4	19344	403677	1547	17797

• Gene Location: location=DS028118:5217438-5218985(+)

Full Sequence      

MRARQVALLATVTWALLTVQSIVQSVTTGDVPGFAVGTTGGGDATPDHPKTLEELEKLLG
DDQPRVVVLDKEFNFLGSAGNTTETGCRPKSNTECLAKNNGFKGQDVILFPDDTTLTHTG
GCDQQVKVEITYDNANKQMLSVRSNKTLRGVGKKGVLKGKGLKLEGDNIIIQNIHITELN
PQYVWRGDAMYLGGIDDRALKKIWIDHVKVSRVGRQMFVSGFDGVEIITISNSDFDGRND
WSSSCDGRHYWGFILDGTTTRVSFLNNYIHSTSGRSPKIIGASSPSANVVAHIANNFWSD
NSGHSFEPGEIAFVLAEGNFFEGTVEPMQADAEKASISVADDCSASLGRSCPANSAKTSG
KFASVNGDRALETVKKYKAITGYKPVKAAQLSESTDNFGVGSLGDSPSQGEVNEANGSKS
DTNTKQEDPAPVANQNGSQKEEAPQNENDKAGSNGLENRVDSGSNNGDSPAPANQGIKAE
DNTQQTGGQGSVAKDFDPVATTSHKSTCATKRRRA

Enzyme Prediction     

EC	4.2.2.10:1

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL1	130	322	2.1e-78	0.983957219251337

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
214765	Amb_all	2.99e-21	127	322	1	187	Amb_all domain.
226384	PelB	1.66e-08	135	327	92	279	Pectate lyase [Carbohydrate transport and metabolism].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ADN18834.1|PL1_4	8.43e-141	24	403	20	399
AHX74068.1|PL1_4	3.39e-140	24	403	20	399
ADN18833.1|PL1_4	3.57e-129	1	403	1	399
AHX74069.1|PL1_4	3.14e-127	27	397	23	397
ADN18835.1|PL1_4	1.26e-126	27	397	23	397

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1IDK_A	7.25e-79	29	363	5	322	Pectin Lyase A [Aspergillus niger]
1IDJ_A	4.01e-78	29	363	5	322	Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
1QCX_A	1.59e-73	29	363	5	323	Pectin Lyase B [Aspergillus niger]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|B8N316|PELF_ASPFN	7.47e-92	15	404	12	383	Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
sp|Q2UJA7|PELF_ASPOR	7.47e-92	15	404	12	383	Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
sp|Q0CZD4|PELF2_ASPTN	3.39e-91	33	364	29	343	Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
sp|A2R6A1|PELF_ASPNC	7.24e-89	28	404	25	384	Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
sp|Q8NJK6|PELF_ASPNG	7.24e-89	28	404	25	384	Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.002012	0.997938	CS pos: 25-26. Pr: 0.9645

TMHMM  Annotations     

There is no transmembrane helices in PITG_00872-t26_1-p1.