logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: PHYSODRAFT_475325-t26_1-p1

You are here: Home > Sequence: PHYSODRAFT_475325-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora sojae
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora sojae
CAZyme ID PHYSODRAFT_475325-t26_1-p1
CAZy Family GH5
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
319 JH159151|CGC4 34102.96 5.6156
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PsojaeP6497 28142 1094619 1653 26489
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.1.1.11:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
CE8 32 297 4.1e-61 0.9305555555555556

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
178051 PLN02432 2.52e-37 21 299 9 277
putative pectinesterase
178372 PLN02773 5.37e-36 34 294 14 282
pectinesterase
395871 Pectinesterase 4.27e-33 34 287 9 271
Pectinesterase.
178113 PLN02497 6.65e-32 22 297 31 309
probable pectinesterase
178098 PLN02480 4.66e-30 25 299 50 324
Probable pectinesterase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
5.49e-143 1 319 1 338
1.70e-127 1 319 1 338
2.16e-127 10 319 22 344
8.76e-127 10 319 22 344
1.86e-114 4 319 19 348

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.71e-54 15 306 1 289
Crystal Structure of the Pectin Methylesterase from Aspergillus niger in Deglycosylated Form [Aspergillus niger ATCC 1015]
4.71e-54 15 306 1 289
Crystal Structure of the Pectin Methylesterase from Aspergillus niger in Penultimately Deglycosylated Form (N-acetylglucosamine Stub at Asn84) [Aspergillus niger ATCC 1015]
6.14e-26 34 287 16 278
Pectin methylesterase from Carrot [Daucus carota]
2.80e-23 34 287 12 274
Chain A, Pectinesterase 1 [Solanum lycopersicum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.05e-63 17 319 20 330
Pectinesterase OS=Aspergillus niger OX=5061 GN=pme1 PE=1 SV=1
2.59e-61 17 318 20 330
Pectinesterase OS=Aspergillus aculeatus OX=5053 GN=pme1 PE=2 SV=1
2.80e-55 17 318 28 324
Probable pectinesterase A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=pmeA PE=3 SV=1
2.80e-55 17 318 28 324
Probable pectinesterase A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pmeA PE=3 SV=1
1.10e-54 17 307 28 315
Probable pectinesterase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pmeA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.931669 0.068357

TMHMM  Annotations      help

There is no transmembrane helices in PHYSODRAFT_475325-t26_1-p1.