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CAZyme Information: PHYSODRAFT_304178-t26_1-p1

You are here: Home > Sequence: PHYSODRAFT_304178-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora sojae
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora sojae
CAZyme ID PHYSODRAFT_304178-t26_1-p1
CAZy Family CE1
CAZyme Description glycoside hydrolase family 6 protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
364 JH159157|CGC3 39065.99 4.1460
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PsojaeP6497 28142 1094619 1653 26489
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PHYSODRAFT_304178-t26_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH6 39 294 4.1e-58 0.9319727891156463

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
396075 Glyco_hydro_6 2.65e-43 87 293 49 287
Glycosyl hydrolases family 6.
227616 CelA1 5.45e-20 77 347 178 462
Cellulase/cellobiase CelA1 [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
5.99e-107 22 332 25 332
1.02e-102 18 347 17 335
1.15e-93 19 346 17 336
1.84e-82 19 332 19 324
1.54e-77 18 327 12 304

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.37e-31 82 317 65 314
GH6 Orpinomyces sp. Y102 enzyme [Orpinomyces sp. Y102],5JX5_B GH6 Orpinomyces sp. Y102 enzyme [Orpinomyces sp. Y102],5JX5_C GH6 Orpinomyces sp. Y102 enzyme [Orpinomyces sp. Y102],5JX5_D GH6 Orpinomyces sp. Y102 enzyme [Orpinomyces sp. Y102],6IDW_A GH6 Orpinomyces sp. Y102 enzyme [Orpinomyces sp. Y102],6IDW_B GH6 Orpinomyces sp. Y102 enzyme [Orpinomyces sp. Y102],6IDW_C GH6 Orpinomyces sp. Y102 enzyme [Orpinomyces sp. Y102],6IDW_D GH6 Orpinomyces sp. Y102 enzyme [Orpinomyces sp. Y102]
5.93e-23 88 317 79 349
Crystal structure of a fungal chimeric cellobiohydrolase Cel6A [Humicola insolens]
1.05e-22 87 317 73 288
Structure of the endoglucanase Cel6 from Mycobacterium tuberculosis in complex with glucose-isofagomine at 1.9 angstrom [Mycobacterium tuberculosis H37Rv]
1.45e-22 87 317 73 288
Structure of the endoglucanase Cel6 from Mycobacterium tuberculosis in complex with METHYL-CELLOBIOSYL-4-DEOXY-4-THIO-BETA-D-CELLOBIOSIDE at 1.6 angstrom [Mycobacterium tuberculosis H37Rv]
1.45e-22 87 317 73 288
Structure of the endoglucanase Cel6 from Mycobacterium tuberculosis in complex with cellobiose at 1.75 angstrom [Mycobacterium tuberculosis H37Rv]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.62e-23 88 317 181 451
Probable 1,4-beta-D-glucan cellobiohydrolase C OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=cbhC PE=3 SV=1
1.86e-21 88 317 182 453
Putative endoglucanase type B OS=Fusarium oxysporum OX=5507 PE=2 SV=1
8.15e-21 24 317 124 447
1,4-beta-D-glucan cellobiohydrolase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=cbhC PE=1 SV=2
2.02e-20 51 320 45 340
Endoglucanase-6B OS=Humicola insolens OX=34413 GN=cel6B PE=1 SV=1
7.28e-20 88 317 190 460
Probable 1,4-beta-D-glucan cellobiohydrolase C OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=cbhC PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000363 0.999637 CS pos: 21-22. Pr: 0.9705

TMHMM  Annotations      help

There is no transmembrane helices in PHYSODRAFT_304178-t26_1-p1.