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CAZyme Information: PHYSODRAFT_247698-t26_1-p1

You are here: Home > Sequence: PHYSODRAFT_247698-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora sojae
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora sojae
CAZyme ID PHYSODRAFT_247698-t26_1-p1
CAZy Family AA17
CAZyme Description polygalacturonase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
286 JH159152|CGC13 30132.43 8.9270
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PsojaeP6497 28142 1094619 1653 26489
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.15:10

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 87 282 3.9e-41 0.5907692307692308

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 5.51e-42 82 285 73 279
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
227721 Pgu1 2.00e-16 93 245 237 399
Polygalacturonase [Carbohydrate transport and metabolism].
215540 PLN03010 1.54e-14 74 285 136 350
polygalacturonase
177865 PLN02218 7.27e-14 94 283 192 382
polygalacturonase ADPG
215426 PLN02793 3.30e-13 121 284 204 370
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.60e-114 27 286 3 326
5.48e-110 30 286 6 354
5.48e-110 30 286 6 354
1.50e-106 32 286 8 340
2.77e-104 49 286 15 318

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
8.47e-33 92 285 106 302
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
8.47e-33 92 285 106 302
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
1.02e-32 92 285 98 294
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
4.07e-32 92 282 98 292
Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_B Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_C Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_D Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_E Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_F Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_G Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini]
5.80e-31 92 282 102 294
Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
8.33e-34 92 284 125 321
Polygalacturonase OS=Cochliobolus carbonum OX=5017 GN=PGN1 PE=3 SV=1
8.08e-33 92 286 144 346
Endo-polygalacturonase OS=Sclerotinia sclerotiorum OX=5180 GN=PG1 PE=3 SV=1
3.45e-32 92 282 130 323
Probable endopolygalacturonase I OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pgaI PE=3 SV=1
6.92e-32 92 282 130 323
Endopolygalacturonase A OS=Aspergillus niger OX=5061 GN=pgaA PE=1 SV=1
6.92e-32 92 282 130 323
Probable endopolygalacturonase A OS=Aspergillus kawachii (strain NBRC 4308) OX=1033177 GN=pgaA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.999086 0.000920

TMHMM  Annotations      download full data without filtering help

Start End
20 42