CAZyme Information: PHYCI_99675T0-p1

Basic Information

• Species: Phytophthora cinnamomi
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
• CAZyme ID: PHYCI_99675T0-p1
• CAZy Family: PL3
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
529		58663.79	4.4158

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PcinnamomiCBS144-22	26201	1048749	70	26131

• Gene Location: location=PcinCBS144-22_SC0425:20481-22070(+)

Full Sequence      

MKIQAALAGLIGLASTTLADPSWHDLAITAPRYGRYLTRTTSGEPFFWQADTAWELTHKL
NKTSIDFYLKTRAEQGYNVVQTVVIAELNGTTRANFYGDLPYNNSDTTQPNDAYFQLIDW
TVDLAASYGILVALVPVWGRWVNGGWHNDEASIFNESTAYEWGKYIGDRYPGLPKILGGD
SDCIWARNTSEAMVSYAADPNVDPATLLGPLEDTTDIWVSMRTGVKDAETAQGYEPVILF
HPTAGWISRPENTPEAYGHLMLPKEEDRVSINGVQSGHATPDALGGFTPYTTWDSTKNYE
LIAKMRDEFTGPVLDLENHYEGAHDNFKTAFPIWNASQVRTGLYHGVYGGATGFTYGANS
VWQMYEPKADLLRESDYYSPSASQNASGSWRQDIFFEGATQIQYITKPLQNFSSEELELL
EPARQLLASPSGYLDVSVNAFEGTRYISILASENRDRYFVYTGHGDSFSLKLGNGSERSG
SARWFSPRDGQYYANATVSVPGNGNGTRVDFTPPSGGSVDDDWLLVLEF

Enzyme Prediction     

No EC number prediction in PHYCI_99675T0-p1.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH140	34	498	6.8e-79	0.9368932038834952

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
404153	DUF4038	8.01e-119	34	412	2	320	Protein of unknown function (DUF4038). A family of putative cellulases.
403955	Collagen_bind_2	3.05e-12	443	528	12	92	Putative collagen-binding domain of a collagenase. This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. It is the C-terminal part of the Structure 3kzs (information derived from TOPSAN).

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
KAF2142288.1|GH140	1.26e-160	14	528	20	534
KAF3763706.1|GH140	4.25e-153	2	527	3	535
KNX49908.1|GH140	5.35e-74	25	524	13	514
KAB8276359.1|GH140	1.18e-73	25	528	26	508
KAE8313632.1|GH140	2.32e-73	25	528	26	508

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5MSY_A	8.64e-28	23	491	13	414	Glycoside hydrolase BT_1012 [Bacteroides thetaiotaomicron VPI-5482],5MSY_B Glycoside hydrolase BT_1012 [Bacteroides thetaiotaomicron VPI-5482],5MSY_C Glycoside hydrolase BT_1012 [Bacteroides thetaiotaomicron VPI-5482]
3KZS_A	1.44e-25	23	491	13	414	Crystal structure of glycosyl hydrolase family 5 (NP_809925.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution [Bacteroides thetaiotaomicron VPI-5482],3KZS_B Crystal structure of glycosyl hydrolase family 5 (NP_809925.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution [Bacteroides thetaiotaomicron VPI-5482],3KZS_C Crystal structure of glycosyl hydrolase family 5 (NP_809925.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution [Bacteroides thetaiotaomicron VPI-5482],3KZS_D Crystal structure of glycosyl hydrolase family 5 (NP_809925.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution [Bacteroides thetaiotaomicron VPI-5482]

Swiss-Prot Hits     

PHYCI_99675T0-p1 has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000657	0.999305	CS pos: 19-20. Pr: 0.9798

TMHMM  Annotations     

There is no transmembrane helices in PHYCI_99675T0-p1.