dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: PHYCI_99248T0-p1

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Basic Information help

Species

Phytophthora cinnamomi

Lineage

Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi

CAZyme ID

PHYCI_99248T0-p1

CAZy Family

PL1

CAZyme Description

unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
795	PcinCBS144-22_SC0305\|CGC1	86758.25	7.6449

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PcinnamomiCBS144-22	26201	1048749	70	26131

Gene Location

Full Sequence Download help

Enzyme Prediction help

EC	2.4.1.109:6

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GT105	82	246	1.8e-32	0.9312977099236641

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
400627	DUF1736	7.24e-22	299	356	17	74	Domain of unknown function (DUF1736). This domain of unknown function is found in various hypothetical metazoan proteins.
276809	TPR	4.30e-11	645	750	4	96	Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.
223533	TPR	8.05e-07	522	792	12	269	Tetratricopeptide (TPR) repeat [General function prediction only].
276809	TPR	1.27e-06	691	779	3	90	Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.
223533	TPR	1.34e-06	618	773	140	284	Tetratricopeptide (TPR) repeat [General function prediction only].

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start
9.26e-63	7	537	18	506
9.69e-62	7	537	18	506
9.69e-62	7	537	18	506
9.69e-62	7	537	18	506
9.69e-62	7	537	18	506

PDB Hits help

PHYCI_99248T0-p1 has no PDB hit.

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
1.72e-62	7	537	18	506	Protein O-mannosyl-transferase TMTC4 OS=Mus musculus OX=10090 GN=Tmtc4 PE=2 SV=1
1.14e-61	4	524	15	492	Protein O-mannosyl-transferase TMTC4 OS=Homo sapiens OX=9606 GN=TMTC4 PE=1 SV=2
7.31e-56	4	588	8	532	Protein O-mannosyl-transferase TMTC3 OS=Mus musculus OX=10090 GN=Tmtc3 PE=1 SV=2
3.18e-55	24	588	21	527	Protein O-mannosyl-transferase TMTC3 OS=Homo sapiens OX=9606 GN=TMTC3 PE=1 SV=2
1.37e-52	13	588	38	595	Protein O-mannosyl-transferase Tmtc3 OS=Drosophila melanogaster OX=7227 GN=Tmtc3 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.023202	0.976761	CS pos: 28-29. Pr: 0.8958

TMHMM Annotations download full data without filtering help

Start	End
10	32
150	172
177	199
206	225
262	279
346	364
379	401
408	430