CAZyme Information: PHYCI_98650T0-p1

Basic Information

• Species: Phytophthora cinnamomi
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
• CAZyme ID: PHYCI_98650T0-p1
• CAZy Family: GT96
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
753		78531.16	8.6463

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PcinnamomiCBS144-22	26201	1048749	70	26131

• Gene Location: location=PcinCBS144-22_SC0239:50330-52687(-)

Full Sequence      

MRLPGFNCWAGALLALSAANFGANAQLYDAIVVGSGPGGLVAAEYLSRDSSVSVLILEAG
PKSLAATGGTDAPSYAQGRGLTKFDIPGEYDGTTYNSTNEQYRVDWTSVASMWLGKLVGG
CSSINAALYFRPPDSYVTNVQWPFSAAQMVSKMDENEKLHGHTDKPSPDGVWYIQEGYSI
VSKALLARGYAERTLNDAAARNSKSKTFGHAPFTFKNGKRDSPANAFWGPMSSRSNVKLL
TGAKVDYILRAAGGKATGVVYNGGTQATLSARGAVIMAAGALSTPKVLIQSGIGPSSQLS
MLNGRNGFAGVSQAAGWVVNGNVGRNLFDTNVVFASFSHPQMSSFRYRTKPSWAIDQYMN
KGFTGPFSSSGPTLISYENYDVQGRNYEFQSTALTNGFGEFATRTNAFTLSLRDLAAMQS
YAQRTVSAMVAQGATFLSAGSDDASVANWVAANRGYIAHHFGGSCFASKNSADSSRCADE
KLRVIGMSNVFVADGSAMRDGTVNPYGFIMYIGREAADQVKSYLASNNGGSGATCSSPEN
NVNYQGSDVGSQQSASASGCCTICAANSNCKAYTWTNYKGGTCWLKSAKGGAVTQSGAVS
ATLGGSSTSSCSAIEENTNYGGADIGNALSSSAEGCCAICKGRTGCNAYTWTNYNSGTCW
LKSAKGTATSQNGARSAQISSSSSTCTLVNNVDYANNDIGSSRSSTASGCCAICRAKTGC
KVFTWTNYNGGTCWLKSAQGTKSTSAGAVSGSI

Enzyme Prediction     

EC	1.1.99.18:3

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
AA3	21	411	2.9e-87	0.7098540145985401

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
225186	BetA	1.41e-36	28	522	8	535	Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000	PRK02106	7.12e-22	28	329	6	298	choline dehydrogenase; Validated
366272	GMC_oxred_N	2.22e-17	115	329	24	215	GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
238533	APPLE_Factor_XI_like	1.11e-12	687	752	7	71	Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
238533	APPLE_Factor_XI_like	2.21e-11	609	677	3	70	Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ20744.1|AA3_1	9.47e-244	9	603	9	637
AIG55859.1|AA3_1	5.73e-212	28	753	24	811
AIG55821.1|AA3_1	2.68e-188	7	750	3	807
AIG55589.1|AA3_1	9.52e-136	13	502	7	526
AIG55820.1|AA3_1	3.73e-133	7	522	3	551

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1KDG_A	1.36e-43	24	380	4	362	Chain A, cellobiose dehydrogenase [Phanerodontia chrysosporium],1KDG_B Chain B, cellobiose dehydrogenase [Phanerodontia chrysosporium]
1NAA_A	1.71e-43	28	380	3	357	Chain A, Cellobiose dehydrogenase [Phanerodontia chrysosporium],1NAA_B Chain B, Cellobiose dehydrogenase [Phanerodontia chrysosporium]
4QI4_A	2.03e-35	28	342	8	321	Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides],4QI5_A Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
4QI6_A	7.58e-35	28	342	230	543	Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
4QI7_A	5.50e-28	28	374	230	577	Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A],4QI7_B Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q01738|CDH_PHACH	7.45e-42	24	380	231	589	Cellobiose dehydrogenase OS=Phanerodontia chrysosporium OX=2822231 GN=CDH-1 PE=1 SV=1
sp|A6X2G7|BETA_BRUA4	2.60e-14	29	299	4	270	Oxygen-dependent choline dehydrogenase OS=Brucella anthropi (strain ATCC 49188 / DSM 6882 / CCUG 24695 / JCM 21032 / LMG 3331 / NBRC 15819 / NCTC 12168 / Alc 37) OX=439375 GN=betA PE=3 SV=1
sp|Q988C9|4PADH_RHILO	4.47e-14	24	300	3	276	4-pyridoxate dehydrogenase OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=padh1 PE=1 SV=1
sp|Q8YFY2|BETA_BRUME	1.05e-13	29	299	4	270	Oxygen-dependent choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) OX=224914 GN=betA PE=3 SV=2
sp|A5VPA6|BETA_BRUO2	1.05e-13	29	299	4	270	Oxygen-dependent choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) OX=444178 GN=betA PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000952	0.999020	CS pos: 25-26. Pr: 0.9423

TMHMM  Annotations     

There is no transmembrane helices in PHYCI_98650T0-p1.