logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: PHYCI_97078T0-p1

You are here: Home > Sequence: PHYCI_97078T0-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora cinnamomi
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
CAZyme ID PHYCI_97078T0-p1
CAZy Family GT71
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
202 PcinCBS144-22_SC0148|CGC1 22228.60 4.0385
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcinnamomiCBS144-22 26201 1048749 70 26131
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PHYCI_97078T0-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 15 194 3.7e-48 0.7224489795918367

CDD Domains      help

PHYCI_97078T0-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
4.39e-140 1 202 1 202
3.32e-135 1 202 1 202
1.92e-134 1 202 1 202
7.82e-134 1 202 1 202
1.30e-132 1 202 1 202

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
8.83e-21 92 184 70 171
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

PHYCI_97078T0-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.259947 0.740030 CS pos: 24-25. Pr: 0.3261

TMHMM  Annotations      help

There is no transmembrane helices in PHYCI_97078T0-p1.