CAZyme Information: PHYCI_94152T0-p1

Basic Information

• Species: Phytophthora cinnamomi
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
• CAZyme ID: PHYCI_94152T0-p1
• CAZy Family: GT62
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
302	PcinCBS144-22_SC0064|CGC1	31665.00	8.5983

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PcinnamomiCBS144-22	26201	1048749	70	26131

• Gene Location: location=PcinCBS144-22_SC0064:46811-47803(+)

Full Sequence      

MMRFLALLAAASCVLSAQALTTHEMTEDITFDSLEVAEGGRKLAGAQVDTSLWAEKYTPG
QVIAAEDEERAIGLWPTSKGTVPLIRPRVVGPTTPFDGGMKTFKRSNVAFRSGAKMIRSN
AVFVVQAGGTLSNVIIAGGGGVFCETHNCALVNVWFRDSIQSALHINSGTGITTITGGGA
RNVAHRVVYGQASGTVVISGGFYMENSGRLFESCGTCGPVKRGVIVDGVVSVNPTAELIR
VNQNYNDRGTISKASITTADSLPVCTRFNGGATPRKVGNEAFPPVCSYTNAAVTVRSPAT
QS

Enzyme Prediction     

EC	4.2.2.2:4

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL3	79	270	7.8e-39	0.9896907216494846

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
397360	Pectate_lyase	1.85e-36	75	270	4	195	Pectate lyase.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ26062.1|PL3_2	3.48e-107	11	298	10	283
ADN18841.1|PL3_2	6.62e-43	73	295	24	252
ADN18840.1|PL3_2	1.66e-41	60	294	21	259
ADN18837.1|PL3_2	5.47e-39	73	293	34	258
ADN18836.1|PL3_2	4.46e-33	75	252	22	202

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3B90_A	3.52e-09	124	270	36	196	Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B90_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]
3B4N_A	7.62e-09	124	270	154	314	Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B4N_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_A Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q0CJ20|PLYG_ASPTN	2.91e-33	76	270	28	219	Probable pectate lyase G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyG PE=3 SV=1
sp|Q5BA88|PLYD_EMENI	3.48e-31	76	270	43	236	Probable pectate lyase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyD PE=3 SV=1
sp|Q0CJ49|PLYD_ASPTN	1.03e-30	76	289	35	247	Probable pectate lyase D OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyD PE=3 SV=1
sp|A1C4B8|PLYE_ASPCL	1.06e-30	50	276	13	236	Probable pectate lyase E OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=plyE PE=3 SV=1
sp|Q5ATC7|PLYH_EMENI	1.84e-28	76	270	41	232	Pectate lyase H OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyH PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000225	0.999734	CS pos: 19-20. Pr: 0.9781

TMHMM  Annotations     

There is no transmembrane helices in PHYCI_94152T0-p1.