logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: PHYCI_92365T0-p1

You are here: Home > Sequence: PHYCI_92365T0-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora cinnamomi
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
CAZyme ID PHYCI_92365T0-p1
CAZy Family GT48
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
306 31867.65 4.2980
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcinnamomiCBS144-22 26201 1048749 70 26131
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PHYCI_92365T0-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA16 25 192 4.2e-22 0.9880239520958084

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
397269 LPMO_10 1.59e-05 93 193 85 186
Lytic polysaccharide mono-oxygenase, cellulose-degrading. This domain is found associated with a wide variety of cellulose binding domains. This is a family of two very closely related proteins that together act as both a C1- and a C4-oxidising lytic polysaccharide mono-oxygenase, degrading cellulose. This domain is also found in baculoviral spheroidins and spindolins, protein of unknown function.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.23e-13 6 198 2 195
4.40e-12 12 199 7 195
4.58e-12 12 199 7 195
4.58e-12 12 199 7 195
4.62e-12 12 199 7 195

PDB Hits      help

PHYCI_92365T0-p1 has no PDB hit.

Swiss-Prot Hits      help

PHYCI_92365T0-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000328 0.999633 CS pos: 24-25. Pr: 0.9696

TMHMM  Annotations      help

There is no transmembrane helices in PHYCI_92365T0-p1.