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CAZyme Information: PHYCI_90231T0-p1

You are here: Home > Sequence: PHYCI_90231T0-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora cinnamomi
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
CAZyme ID PHYCI_90231T0-p1
CAZy Family GT4
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
502 51773.32 4.0039
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcinnamomiCBS144-22 26201 1048749 70 26131
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 123 313 3.7e-83 0.983957219251337

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 8.83e-39 123 315 2 189
Amb_all domain.
226384 PelB 9.84e-15 89 318 69 279
Pectate lyase [Carbohydrate transport and metabolism].
366158 Pec_lyase_C 1.75e-12 111 312 7 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.48e-188 15 399 22 406
2.25e-182 17 294 19 296
3.90e-161 22 400 195 564
5.39e-146 15 342 28 346
5.53e-146 22 395 26 397

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.45e-88 22 386 6 344
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
2.05e-88 22 386 6 344
Pectin Lyase A [Aspergillus niger]
2.28e-87 25 370 9 333
Pectin Lyase B [Aspergillus niger]
9.40e-08 111 355 53 308
Chain A, PECTATE LYASE E [Dickeya chrysanthemi]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.32e-95 8 365 9 352
Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
1.32e-95 8 365 9 352
Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
6.67e-93 3 365 8 354
Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
6.67e-93 3 365 8 354
Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
2.85e-92 25 364 28 349
Probable pectin lyase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pelB PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.536520 0.463475

TMHMM  Annotations      help

There is no transmembrane helices in PHYCI_90231T0-p1.