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CAZyme Information: PHYCI_66922T0-p1

You are here: Home > Sequence: PHYCI_66922T0-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora cinnamomi
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
CAZyme ID PHYCI_66922T0-p1
CAZy Family GT1
CAZyme Description Stationary phase-induced protein, SOR/SNZ family
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
589 64070.57 6.2059
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcinnamomiCBS144-22 26201 1048749 70 26131
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PHYCI_66922T0-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT32 101 176 4.1e-16 0.9

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
179769 PRK04180 0.0 296 573 5 284
pyridoxal 5'-phosphate synthase lyase subunit PdxS.
223292 PdxS 0.0 296 568 8 280
Pyridoxal biosynthesis lyase PdxS [Coenzyme transport and metabolism].
240078 pdxS 0.0 302 568 2 268
PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
129443 TIGR00343 8.21e-170 299 568 1 271
pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine]
396308 SOR_SNZ 1.23e-159 296 501 1 206
SOR/SNZ family. Members of this family are enzymes involved in a new pathway of pyridoxine/pyridoxal 5-phosphate biosynthesis. This family was formerly known as UPF0019.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
5.94e-33 76 283 11 226
5.94e-33 76 283 11 226
4.68e-30 79 291 7 216
6.58e-30 79 269 2 188
2.60e-29 74 279 2 204

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.13e-143 293 568 19 294
PDX1.3-adduct (Arabidopsis) [Arabidopsis thaliana],5K2Z_B PDX1.3-adduct (Arabidopsis) [Arabidopsis thaliana],5K2Z_C PDX1.3-adduct (Arabidopsis) [Arabidopsis thaliana],5K2Z_D PDX1.3-adduct (Arabidopsis) [Arabidopsis thaliana],5K3V_A apo-PDX1.3 (Arabidopsis) [Arabidopsis thaliana],5K3V_B apo-PDX1.3 (Arabidopsis) [Arabidopsis thaliana],5K3V_C apo-PDX1.3 (Arabidopsis) [Arabidopsis thaliana],5K3V_D apo-PDX1.3 (Arabidopsis) [Arabidopsis thaliana]
3.24e-143 293 568 19 294
Crystal structure of Arabidopsis thaliana Pdx1-PLP complex [Arabidopsis thaliana],5LNR_B Crystal structure of Arabidopsis thaliana Pdx1-PLP complex [Arabidopsis thaliana],5LNR_C Crystal structure of Arabidopsis thaliana Pdx1-PLP complex [Arabidopsis thaliana],5LNR_D Crystal structure of Arabidopsis thaliana Pdx1-PLP complex [Arabidopsis thaliana],5LNS_A Crystal structure of Arabidopsis thaliana Pdx1-R5P complex [Arabidopsis thaliana],5LNS_B Crystal structure of Arabidopsis thaliana Pdx1-R5P complex [Arabidopsis thaliana],5LNS_C Crystal structure of Arabidopsis thaliana Pdx1-R5P complex [Arabidopsis thaliana],5LNS_D Crystal structure of Arabidopsis thaliana Pdx1-R5P complex [Arabidopsis thaliana],5LNU_A Crystal structure of Arabidopsis thaliana Pdx1-I320 complex [Arabidopsis thaliana],5LNU_B Crystal structure of Arabidopsis thaliana Pdx1-I320 complex [Arabidopsis thaliana],5LNU_C Crystal structure of Arabidopsis thaliana Pdx1-I320 complex [Arabidopsis thaliana],5LNU_D Crystal structure of Arabidopsis thaliana Pdx1-I320 complex [Arabidopsis thaliana],5LNV_A Crystal structure of Arabidopsis thaliana Pdx1-I320 complex from multiple crystals [Arabidopsis thaliana],5LNV_B Crystal structure of Arabidopsis thaliana Pdx1-I320 complex from multiple crystals [Arabidopsis thaliana],5LNV_C Crystal structure of Arabidopsis thaliana Pdx1-I320 complex from multiple crystals [Arabidopsis thaliana],5LNV_D Crystal structure of Arabidopsis thaliana Pdx1-I320 complex from multiple crystals [Arabidopsis thaliana],5LNW_A Crystal structure of Arabidopsis thaliana Pdx1-I320-G3P complex [Arabidopsis thaliana],5LNW_B Crystal structure of Arabidopsis thaliana Pdx1-I320-G3P complex [Arabidopsis thaliana],5LNW_C Crystal structure of Arabidopsis thaliana Pdx1-I320-G3P complex [Arabidopsis thaliana],5LNW_D Crystal structure of Arabidopsis thaliana Pdx1-I320-G3P complex [Arabidopsis thaliana]
7.03e-143 293 568 48 323
Chain M, Pyridoxal 5'-phosphate synthase subunit PDX1.3 [Arabidopsis thaliana],7LB6_N Chain N, Pyridoxal 5'-phosphate synthase subunit PDX1.3 [Arabidopsis thaliana],7LB6_O Chain O, Pyridoxal 5'-phosphate synthase subunit PDX1.3 [Arabidopsis thaliana],7LB6_P Chain P, Pyridoxal 5'-phosphate synthase subunit PDX1.3 [Arabidopsis thaliana],7LB6_Q Chain Q, Pyridoxal 5'-phosphate synthase subunit PDX1.3 [Arabidopsis thaliana],7LB6_R Chain R, Pyridoxal 5'-phosphate synthase subunit PDX1.3 [Arabidopsis thaliana],7LB6_S Chain S, Pyridoxal 5'-phosphate synthase subunit PDX1.3 [Arabidopsis thaliana],7LB6_T Chain T, Pyridoxal 5'-phosphate synthase subunit PDX1.3 [Arabidopsis thaliana],7LB6_U Chain U, Pyridoxal 5'-phosphate synthase subunit PDX1.3 [Arabidopsis thaliana],7LB6_V Chain V, Pyridoxal 5'-phosphate synthase subunit PDX1.3 [Arabidopsis thaliana],7LB6_W Chain W, Pyridoxal 5'-phosphate synthase subunit PDX1.3 [Arabidopsis thaliana],7LB6_X Chain X, Pyridoxal 5'-phosphate synthase subunit PDX1.3 [Arabidopsis thaliana]
2.52e-142 293 568 19 294
PDX1.2/PDX1.3 complex (PDX1.3:K97A) [Arabidopsis thaliana],6HYE_D PDX1.2/PDX1.3 complex (PDX1.3:K97A) [Arabidopsis thaliana],6HYE_F PDX1.2/PDX1.3 complex (PDX1.3:K97A) [Arabidopsis thaliana],6HYE_H PDX1.2/PDX1.3 complex (PDX1.3:K97A) [Arabidopsis thaliana]
5.24e-142 292 568 19 295
Crystal structure of Arabidopsis thaliana Pdx1K166R-preI320 complex [Arabidopsis thaliana],5LNT_B Crystal structure of Arabidopsis thaliana Pdx1K166R-preI320 complex [Arabidopsis thaliana],5LNT_C Crystal structure of Arabidopsis thaliana Pdx1K166R-preI320 complex [Arabidopsis thaliana],5LNT_D Crystal structure of Arabidopsis thaliana Pdx1K166R-preI320 complex [Arabidopsis thaliana]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
8.23e-150 296 569 5 278
Pyridoxal 5'-phosphate synthase subunit PdxS OS=Roseiflexus sp. (strain RS-1) OX=357808 GN=pdxS PE=3 SV=1
1.17e-149 296 568 5 277
Pyridoxal 5'-phosphate synthase subunit PdxS OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) OX=480224 GN=pdxS PE=3 SV=1
1.17e-149 296 568 5 277
Pyridoxal 5'-phosphate synthase subunit PdxS OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) OX=324602 GN=pdxS PE=3 SV=1
1.33e-148 296 568 5 277
Pyridoxal 5'-phosphate synthase subunit PdxS OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) OX=326427 GN=pdxS PE=3 SV=1
7.60e-148 296 569 5 278
Pyridoxal 5'-phosphate synthase subunit PdxS OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) OX=383372 GN=pdxS PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.931655 0.068383

TMHMM  Annotations      download full data without filtering help

Start End
9 31