CAZyme Information: PHYCI_316476T0-p1

Basic Information

• Species: Phytophthora cinnamomi
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
• CAZyme ID: PHYCI_316476T0-p1
• CAZy Family: GH5
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
345	PcinCBS144-22_SC0080|CGC1	40416.77	6.4976

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PcinnamomiCBS144-22	26201	1048749	70	26131

• Gene Location: location=PcinCBS144-22_SC0080:253854-254891(-)

Full Sequence      

MSKAELCAQDVESSLRVLDMLEVTPEPAPSHNDSEQGLYPRILCFAVSYSAQHQTRVRAV
AETWGQRCDQLLFFSNMSDTIIVGAGTPAERRYQVVQLDIIADHAHLWLRTRAALKYLHT
YFRHDYDWFYKCDDDTYAIIENMRKYLKRPEIVQRFNREPMQMGHRFSMPNDTFNFYIRD
KTLNALWHSRWDRLVYNSGGAGYVMNRLYLDKIVESLQDFTCLPDEASGTMPEDAAVSFC
MMWNDVYPWDTRDHHGRERWHALSPGSVFVTWNPKDWYIMYHKTVGGVRSKFESVAPDSV
AFHYVKPPLMYHLERSLYFCRSEHDHISSFNEEFGLAIGDKVMAV

Enzyme Prediction     

EC	2.4.1.122:25

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GT31	93	242	1.7e-17	0.7083333333333334

CDD Domains     

PHYCI_316476T0-p1 has no CDD domain.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ22190.1|GT31	1.17e-128	72	343	1	276
CCA14287.1|GT31	4.91e-112	2	345	26	363
AIG56262.1|GT31	9.44e-105	1	343	24	348
AIG55842.1|GT31	8.91e-86	6	322	29	307
UIZ24342.1|GT31	6.39e-47	41	310	54	334

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7Q4I_A	1.99e-31	41	321	28	270	Chain A, Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [Drosophila melanogaster],7Q4I_B Chain B, Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [Drosophila melanogaster]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q18515|C1GLT_CAEEL	7.30e-31	41	318	105	344	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 OS=Caenorhabditis elegans OX=6239 GN=C38H2.2 PE=2 SV=2
sp|Q7K237|C1GLT_DROME	3.65e-30	41	321	100	342	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 OS=Drosophila melanogaster OX=7227 GN=C1GalTA PE=2 SV=1
sp|Q5F3G7|C1GLT_CHICK	1.18e-26	37	321	83	328	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 OS=Gallus gallus OX=9031 GN=C1GALT1 PE=2 SV=1
sp|Q0VC84|C1GLT_BOVIN	1.15e-25	31	321	76	327	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 OS=Bos taurus OX=9913 GN=C1GALT1 PE=2 SV=1
sp|Q9NS00|C1GLT_HUMAN	3.86e-25	31	321	76	327	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 OS=Homo sapiens OX=9606 GN=C1GALT1 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000049	0.000000

TMHMM  Annotations     

There is no transmembrane helices in PHYCI_316476T0-p1.