CAZyme Information: PHYCI_306867T0-p1

Basic Information

• Species: Phytophthora cinnamomi
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
• CAZyme ID: PHYCI_306867T0-p1
• CAZy Family: GH5
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
783	PcinCBS144-22_SC0024|CGC2	86474.99	4.4097

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PcinnamomiCBS144-22	26201	1048749	70	26131

• Gene Location: location=PcinCBS144-22_SC0024:293866-296288(-)

Full Sequence      

MISSWPLLVGFAAIAVVDAISDSGSDSGGSGSSTATDRSLVKLETRSGIRPWVDPDTPDD
VRTYVSSRGDAWELVMSDEFGDVTRNFSAGGDHIWTSLEMPDGTNDALQIYSHDMTSVEC
DDNEGGLCYLQIKSIDEVNNITVWNSYLRPPAYQNSTFYYRSGMLQTWNKFCFQGGMLEV
RAKLPAVLGNDTGNPDIGKGNNARAENTQFYPTWPGIWLMGGLGRALFASSTARMWPFSY
NECNETVFNSSNQRISACDPDPGHGMNPYQGRGAVEIDLLEGGGVAISSSIQIAPGMPAD
YRRAAINKTLGDWSYCMYSQECATTGANLPGVPTEFYEERGHQSWYQGLRYGSNNYCVVD
GNDTQSYSLVAASMKNITENVCDLLYCPASNDVHGDMGYIDGDKSLGHWNINSHGTCFPA
MNGYQGVFLCDPDNQDNRCSEPRNDSTPKTNTMEPYNYQMDALSANWGIHMGAYYDYVAY
ELEWVTGDNGYLRWMVGGHPIFEIPAEAVVNTPQGGSKPNPRLTFPEEPSYIILNVALSA
AWGTYPPNPGKPCRGDGKDEEANYICDSFPLYMKIDYVRLYQDTSESSTMAHECDPASHP
TRQWILDHLSDYVDGDNQLVEVQGGAPCRDHTDCTIPFSVQYTFHTGICNADTGRCECTN
EFWGGPRCTFQLGATTANGEDASKVTFGPPLYAAFFVLGVVLFLTIVVFVVMGIRRRRKL
MKDAEKTKELTYVVADMKSAKIMGSSCEMITFASTDNDDEDEHGDTVQTRRSSLASGPYH
RFR

Enzyme Prediction     

EC	-	-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH16	78	304	2.9e-54	0.6073619631901841

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
397841	SKN1	3.63e-55	47	612	91	476	Beta-glucan synthesis-associated protein (SKN1). This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules.
185689	GH16_fungal_KRE6_glucanase	1.14e-43	74	582	1	295	Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
185693	GH16_laminarinase_like	7.73e-10	480	581	163	235	Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
225182	BglS	9.33e-09	148	243	91	156	Beta-glucanase, GH16 family [Carbohydrate transport and metabolism].
185693	GH16_laminarinase_like	8.89e-08	139	221	38	102	Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ28151.1|GH16	2.40e-271	45	707	32	698
UIZ28149.1|GH16	4.82e-271	45	690	31	679
UIZ28152.1|GH16	8.05e-266	43	726	18	703
UIZ27996.1|GH16	6.67e-261	36	696	23	668
UIZ27810.1|GH16	1.06e-259	39	712	59	731

PDB Hits     

PHYCI_306867T0-p1 has no PDB hit.

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|P33336|SKN1_YEAST	3.17e-37	26	616	329	743	Beta-glucan synthesis-associated protein SKN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SKN1 PE=1 SV=1
sp|P32486|KRE6_YEAST	4.32e-36	53	610	307	685	Beta-glucan synthesis-associated protein KRE6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=KRE6 PE=1 SV=2
sp|P87024|SKN1_CANAX	1.04e-31	53	612	336	714	Beta-glucan synthesis-associated protein SKN1 OS=Candida albicans OX=5476 GN=SKN1 PE=2 SV=1
sp|P87023|KRE6_CANAX	3.00e-29	53	612	332	717	Beta-glucan synthesis-associated protein KRE6 OS=Candida albicans OX=5476 GN=KRE6 PE=2 SV=1
sp|O13789|YEOB_SCHPO	5.26e-25	53	613	224	613	Uncharacterized beta-glucan synthesis-associated protein C17G6.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17G6.11c PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000415	0.999566	CS pos: 19-20. Pr: 0.9618

TMHMM  Annotations     

Start	End
692	714