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CAZyme Information: PHYCI_275689T0-p1

You are here: Home > Sequence: PHYCI_275689T0-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora cinnamomi
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
CAZyme ID PHYCI_275689T0-p1
CAZy Family GH30
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
282 30766.30 4.5946
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcinnamomiCBS144-22 26201 1048749 70 26131
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PHYCI_275689T0-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 31 265 7.2e-46 0.9183673469387755

CDD Domains      help

PHYCI_275689T0-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
4.12e-102 17 281 2 267
1.16e-96 20 191 1 185
3.40e-96 17 281 2 267
9.70e-96 17 238 2 221
6.32e-53 35 190 20 185

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
9.89e-20 40 190 1 170
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

PHYCI_275689T0-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.396813 0.603177 CS pos: 39-40. Pr: 0.5305

TMHMM  Annotations      help

There is no transmembrane helices in PHYCI_275689T0-p1.