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CAZyme Information: PHYCI_273497T0-p1

You are here: Home > Sequence: PHYCI_273497T0-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora cinnamomi
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
CAZyme ID PHYCI_273497T0-p1
CAZy Family GH30
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
287 30619.30 4.2087
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcinnamomiCBS144-22 26201 1048749 70 26131
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PHYCI_273497T0-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 12 258 2e-64 0.9306122448979591

CDD Domains      help

PHYCI_273497T0-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.75e-129 1 199 1 199
7.55e-129 1 199 1 199
1.34e-126 1 287 1 271
1.32e-101 1 200 1 177
1.30e-81 1 200 1 205

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.95e-14 90 195 55 174
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

PHYCI_273497T0-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000512 0.999470 CS pos: 22-23. Pr: 0.9758

TMHMM  Annotations      help

There is no transmembrane helices in PHYCI_273497T0-p1.