You are browsing environment: FUNGIDB
CAZyme Information: PHYCI_261412T0-p1
You are here: Home > Sequence: PHYCI_261412T0-p1
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytophthora cinnamomi | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi | |||||||||||
| CAZyme ID | PHYCI_261412T0-p1 | |||||||||||
| CAZy Family | GH30 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
|
|||||||||||
| Genome Property |
|
|||||||||||
| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 3.2.1.15:10 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 2 | 166 | 1.6e-33 | 0.48307692307692307 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 395231 | Glyco_hydro_28 | 7.49e-32 | 1 | 162 | 143 | 303 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| 215540 | PLN03010 | 1.58e-16 | 1 | 169 | 212 | 381 | polygalacturonase |
| 215426 | PLN02793 | 4.21e-14 | 1 | 139 | 232 | 368 | Probable polygalacturonase |
| 177865 | PLN02218 | 1.69e-12 | 6 | 148 | 246 | 391 | polygalacturonase ADPG |
| 178580 | PLN03003 | 2.90e-10 | 4 | 145 | 196 | 337 | Probable polygalacturonase At3g15720 |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 2.26e-119 | 1 | 179 | 291 | 469 | |
| 4.43e-114 | 1 | 179 | 149 | 327 | |
| 5.85e-113 | 1 | 179 | 228 | 406 | |
| 4.81e-89 | 1 | 178 | 193 | 370 | |
| 8.02e-86 | 1 | 179 | 1 | 179 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4.61e-26 | 7 | 175 | 165 | 333 | Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_B Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_C Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_D Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_E Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_F Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_G Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini] |
|
| 9.72e-25 | 1 | 177 | 166 | 342 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
|
| 9.72e-25 | 1 | 177 | 166 | 342 | Chain A, endo-polygalacturonase [Evansstolkia leycettana] |
|
| 2.37e-23 | 1 | 177 | 158 | 334 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
|
| 5.29e-22 | 1 | 171 | 171 | 338 | Endopolygalacturonase from the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2.95e-29 | 4 | 175 | 186 | 355 | Polygalacturonase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PGU1 PE=1 SV=1 |
|
| 3.04e-29 | 1 | 162 | 185 | 345 | Probable endopolygalacturonase A OS=Aspergillus parasiticus OX=5067 GN=pgaA PE=2 SV=1 |
|
| 2.21e-28 | 6 | 175 | 187 | 356 | Probable endopolygalacturonase B OS=Aspergillus kawachii OX=1069201 GN=pgaB PE=3 SV=1 |
|
| 2.21e-28 | 6 | 175 | 187 | 356 | Endopolygalacturonase B OS=Aspergillus niger OX=5061 GN=pgaB PE=1 SV=1 |
|
| 2.21e-28 | 6 | 175 | 187 | 356 | Probable endopolygalacturonase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pgaB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 1.000005 | 0.000016 |