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CAZyme Information: PHYCI_258598T0-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytophthora cinnamomi | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi | |||||||||||
| CAZyme ID | PHYCI_258598T0-p1 | |||||||||||
| CAZy Family | GH3 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 3.2.1.15:10 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 113 | 417 | 8e-60 | 0.9323076923076923 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 395231 | Glyco_hydro_28 | 1.30e-67 | 115 | 411 | 1 | 303 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| 215540 | PLN03010 | 5.66e-25 | 167 | 426 | 141 | 389 | polygalacturonase |
| 215426 | PLN02793 | 1.30e-22 | 115 | 388 | 80 | 368 | Probable polygalacturonase |
| 178580 | PLN03003 | 5.63e-21 | 115 | 394 | 51 | 337 | Probable polygalacturonase At3g15720 |
| 215120 | PLN02188 | 7.87e-21 | 165 | 388 | 122 | 348 | polygalacturonase/glycoside hydrolase family protein |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 7.88e-289 | 1 | 428 | 1 | 403 | |
| 1.69e-238 | 50 | 428 | 9 | 388 | |
| 3.51e-216 | 1 | 428 | 1 | 413 | |
| 3.51e-216 | 1 | 428 | 1 | 413 | |
| 7.86e-211 | 1 | 428 | 1 | 434 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3.38e-64 | 97 | 428 | 8 | 344 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
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| 1.86e-63 | 97 | 428 | 8 | 344 | Chain A, endo-polygalacturonase [Evansstolkia leycettana] |
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| 2.09e-63 | 99 | 428 | 2 | 336 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
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| 9.71e-62 | 113 | 428 | 20 | 339 | Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus] |
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| 7.49e-60 | 100 | 428 | 3 | 336 | Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_B Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_C Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_D Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_E Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_F Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 8.42e-66 | 92 | 423 | 19 | 354 | Polygalacturonase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PGU1 PE=1 SV=1 |
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| 5.73e-64 | 99 | 428 | 42 | 378 | Probable endopolygalacturonase E OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pgaE PE=3 SV=1 |
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| 1.21e-63 | 99 | 428 | 34 | 368 | Probable endopolygalacturonase I OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pgaI PE=3 SV=1 |
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| 5.67e-63 | 88 | 428 | 16 | 360 | Probable endopolygalacturonase B OS=Aspergillus kawachii OX=1069201 GN=pgaB PE=3 SV=1 |
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| 8.75e-63 | 99 | 428 | 42 | 378 | Endopolygalacturonase E OS=Aspergillus niger OX=5061 GN=pgaE PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000290 | 0.999656 | CS pos: 22-23. Pr: 0.9191 |