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CAZyme Information: PHYCI_2098T0-p1

You are here: Home > Sequence: PHYCI_2098T0-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora cinnamomi
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
CAZyme ID PHYCI_2098T0-p1
CAZy Family CE5
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
349 39348.23 8.5992
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcinnamomiCBS144-22 26201 1048749 70 26131
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PHYCI_2098T0-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT19 27 318 9.6e-59 0.6016949152542372

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
234580 lpxB 4.83e-60 23 338 1 237
lipid-A-disaccharide synthase; Reviewed
223834 LpxB 2.45e-58 23 338 1 238
Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis].
397004 LpxB 3.03e-47 26 315 1 217
Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide.
167141 lpxB 9.28e-29 27 204 230 392
lipid-A-disaccharide synthase; Reviewed
129319 lpxB 1.31e-28 28 307 10 215
lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
5.96e-42 26 204 6 167
8.33e-42 26 204 6 167
3.17e-41 26 204 6 167
3.17e-41 26 204 6 167
3.17e-41 26 204 6 167

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.15e-20 23 204 6 170
Lipid A Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)]
2.15e-20 23 204 6 170
Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.64e-42 26 204 6 167
Lipid-A-disaccharide synthase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) OX=391165 GN=lpxB PE=3 SV=1
1.31e-36 26 204 31 192
Lipid-A-disaccharide synthase OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=lpxB PE=3 SV=1
1.94e-36 24 208 40 218
Probable lipid-A-disaccharide synthase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=LPXB PE=2 SV=1
1.40e-34 25 204 3 167
Lipid-A-disaccharide synthase OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=lpxB PE=3 SV=1
1.40e-34 25 204 3 167
Lipid-A-disaccharide synthase OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=lpxB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000084 0.000001

TMHMM  Annotations      help

There is no transmembrane helices in PHYCI_2098T0-p1.