logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: PHYCI_18259T0-p1

You are here: Home > Sequence: PHYCI_18259T0-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora cinnamomi
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
CAZyme ID PHYCI_18259T0-p1
CAZy Family AA6
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
267 PcinCBS144-22_SC0225|CGC1 28853.69 4.6479
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcinnamomiCBS144-22 26201 1048749 70 26131
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PHYCI_18259T0-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 12 219 8.5e-69 0.8081632653061225

CDD Domains      help

PHYCI_18259T0-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.84e-169 1 267 1 268
2.11e-164 1 267 1 267
2.46e-163 1 267 1 267
2.91e-155 1 267 1 267
1.19e-154 1 267 1 267

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.42e-20 25 200 1 177
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

PHYCI_18259T0-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000230 0.999737 CS pos: 24-25. Pr: 0.9767

TMHMM  Annotations      help

There is no transmembrane helices in PHYCI_18259T0-p1.