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CAZyme Information: PHYCI_15153T0-p1

You are here: Home > Sequence: PHYCI_15153T0-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora cinnamomi
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
CAZyme ID PHYCI_15153T0-p1
CAZy Family AA17
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
122 13221.83 4.3440
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcinnamomiCBS144-22 26201 1048749 70 26131
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.2:4

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL3 40 122 1.2e-32 0.4175257731958763

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
397360 Pectate_lyase 1.12e-40 33 122 1 88
Pectate lyase.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.27e-58 1 122 1 122
3.84e-55 1 122 1 122
4.23e-44 13 122 6 115
2.26e-42 28 122 20 114
2.26e-42 28 122 20 114

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
8.12e-12 51 122 11 81
Crystal Structure Of Pectate Lyase From Bacillus Sp. Strain Ksm-P15. [Bacillus sp. KSM-P15]
1.59e-08 50 122 15 84
The liganded structure of C. bescii family 3 pectate lyase [Caldicellulosiruptor bescii DSM 6725],4EW9_B The liganded structure of C. bescii family 3 pectate lyase [Caldicellulosiruptor bescii DSM 6725]
1.60e-08 50 122 16 85
The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii [Caldicellulosiruptor bescii],3T9G_B The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii [Caldicellulosiruptor bescii]
1.73e-08 50 122 24 93
C. bescii Family 3 pectate lyase double mutant K108A/Q111A in complex with trigalacturonic acid [Caldicellulosiruptor bescii DSM 6725],4YZA_B C. bescii Family 3 pectate lyase double mutant K108A/Q111A in complex with trigalacturonic acid [Caldicellulosiruptor bescii DSM 6725]
1.73e-08 50 122 24 93
C. bescii Family 3 pectate lyase double mutant K108A/Q111N in complex with trigalacturonic acid [Caldicellulosiruptor bescii DSM 6725],4YZQ_B C. bescii Family 3 pectate lyase double mutant K108A/Q111N in complex with trigalacturonic acid [Caldicellulosiruptor bescii DSM 6725]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
8.67e-28 37 122 28 111
Probable pectate lyase G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyG PE=3 SV=1
3.37e-26 37 122 23 106
Probable pectate lyase D OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=plyD PE=3 SV=1
3.37e-26 37 122 23 106
Probable pectate lyase D OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=plyD PE=3 SV=1
3.74e-26 37 122 43 126
Probable pectate lyase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyD PE=3 SV=1
2.57e-25 37 122 22 105
Probable pectate lyase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyD PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.001909 0.998080 CS pos: 21-22. Pr: 0.9683

TMHMM  Annotations      help

There is no transmembrane helices in PHYCI_15153T0-p1.