CAZyme Information: PHYCI_118971T0-p1

Basic Information

• Species: Phytophthora cinnamomi
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
• CAZyme ID: PHYCI_118971T0-p1
• CAZy Family: AA17
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
776	PcinCBS144-22_SC0139|CGC2	88389.21	5.4034

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PcinnamomiCBS144-22	26201	1048749	70	26131

• Gene Location: location=PcinCBS144-22_SC0139:29944-32274(+)

Full Sequence      

MAERGGCSARRWMALLLALGVLSVGLLAYRMSALVQPALRPLLRVPRPPRTTPPMYVLVR
AIGNALPPRHDPARALQNLRFTLEHEKLDDEELETHWVLNRLADAHVARQFRELLAEFDA
PFTELPLRLEQYAQAPFNVVVEDQGADRVHEDTRGEDEWTQNQDVNAFYGSKNRYALGIN
VARNLMLDIAKESGARWLLPWDQTCFLTREAWGQIKRDLENAAPDQKYFMSFMDRLHEEN
DVIFSSDFKADPWEEPQLIFRNDSVERFDEHLRYGQRDKAALLIRLQVSGVWNGWGWSSW
EQQRTYANASKDVSGPDAVPSTGYVIRLYSGLESDTEANTVEAGYSREILRAKGVINALD
KLEERVVLDLYDYHPGKLLVYDETLLRKYKEQSNTDEGKQTISDLLDDAKRAMEISEPWT
VASNEALNPERDPRVFANYFDHREGLLGDDDLIREMAYNTTALSLAWRITDEKQYAVQAA
RFLEAWCADSKSAMRATLEYADMSYQKLLTSTDGYARGSLMGIRHTAVIPMLLDAIRLLN
TTSFNTSERVLQGEMSGKIIKWTQDLFDNLQSEYARDTFRWSPGLFAMLYDVQVAALGAF
LNDSKSLRFTLGTMQGRLMTMMSPEEKLLVPTGVASNPYTMLTLATWGFAIDLAQQYGLS
RHLFQFDLTRNRREERVNEEGGLLCRFIGHSVPCCQAEATSGTSGHQCVRALQHADEAQL
FVYSCVVRQALEHCPILRKRPSCMSLARIDPDSKALSAHEMSRYLLPPYPFLRAAT

Enzyme Prediction     

No EC number prediction in PHYCI_118971T0-p1.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL38	448	658	8.4e-21	0.7096774193548387

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
398861	Alginate_lyase	4.67e-09	426	611	27	194	Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QBY01811.1|GT0|PL38	1.82e-59	53	677	249	875
CAG9288887.1|PL38	6.56e-53	53	659	205	849
QSB05068.1|PL38	2.85e-51	53	618	397	964
AHM03579.1|GT2|PL38	1.38e-49	56	667	243	856
UCI09144.1|PL38	5.22e-48	56	647	85	675

PDB Hits     

PHYCI_118971T0-p1 has no PDB hit.

Swiss-Prot Hits     

PHYCI_118971T0-p1 has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000020	0.000008

TMHMM  Annotations     

Start	End
12	34