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CAZyme Information: PHYCI_10238T0-p1

You are here: Home > Sequence: PHYCI_10238T0-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora cinnamomi
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
CAZyme ID PHYCI_10238T0-p1
CAZy Family AA1
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
328 36571.23 6.1644
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcinnamomiCBS144-22 26201 1048749 70 26131
Gene Location Start: 196443; End:197429  Strand: +

Full Sequence      Download help

MDSENNQKWT  FEESSGQLKH  AVHQSFCLDQ  DAGQNNKLQL  YGCSPHNPNQ  QWGLMDPNDI60
SDNWAFSDES  VRFYTMESSK  PFAQLVRSGD  NVAIGFGGTN  VGGSQWFYDA  NTHLVKAKDS120
NMCLDAYQPW  DGGIVHVYAC  NTNEVNQRWN  VDSTTNQLKH  LTHTGFCLDA  DLSANNGAGK180
LQLWGCHLNN  NQVWRMIPAS  ATAVTVHSSS  ANDSYLQPTL  QDTVVGASST  GNSQQHWFWD240
ANSNRLISKI  NAQCLDAYEP  WQGGRVHTYS  CVATEGNQKW  NYDATNQVVK  HVKHIGFCLA300
FDNLSNKLLQ  LKSCNAGDNT  QRIRIEVA328

Enzyme Prediction      help

EC - - -

CAZyme Signature Domains help

Created with Snap16324965829811413114716418019621322924626227829531135147CBM13
Family Start End Evalue family coverage
CBM13 100 210 1.1e-16 0.5957446808510638

CDD Domains      download full data without filtering help

Created with Snap163249658298114131147164180196213229246262278295311102194Ricin_B_lectin115280Ricin_B_lectin87196RICIN163322Ricin_B_lectin119239RICIN
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395527 Ricin_B_lectin 2.62e-14 102 194 35 126
Ricin-type beta-trefoil lectin domain.
395527 Ricin_B_lectin 5.50e-12 115 280 5 126
Ricin-type beta-trefoil lectin domain.
238092 RICIN 1.14e-11 87 196 18 124
Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
395527 Ricin_B_lectin 2.27e-10 163 322 9 125
Ricin-type beta-trefoil lectin domain.
238092 RICIN 1.96e-09 119 239 8 124
Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.

CAZyme Hits      help

Created with Snap163249658298114131147164180196213229246262278295311105324AIG55540.1|CBM13105315AIG55751.1|CBM13|GH3106200CCD28161.1|CBM13|GH17105315AIG56285.1|CBM13|GH3105299AIG56282.1|CBM13
Hit ID E-Value Query Start Query End Hit Start Hit End
AIG55540.1|CBM13 5.58e-39 105 324 377 592
AIG55751.1|CBM13|GH3 9.32e-34 105 315 792 1006
CCD28161.1|CBM13|GH17 2.85e-30 106 200 133 226
AIG56285.1|CBM13|GH3 6.23e-30 105 315 811 1026
AIG56282.1|CBM13 1.08e-29 105 299 373 552

PDB Hits      help

PHYCI_10238T0-p1 has no PDB hit.

Swiss-Prot Hits      help

PHYCI_10238T0-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000082 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in PHYCI_10238T0-p1.