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CAZyme Information: PHYCI_101913T0-p1

You are here: Home > Sequence: PHYCI_101913T0-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora cinnamomi
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora cinnamomi
CAZyme ID PHYCI_101913T0-p1
CAZy Family AA1
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
644 68302.15 8.1441
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcinnamomiCBS144-22 26201 1048749 70 26131
Gene Location Start: 128875; End:130809  Strand: +

Full Sequence      Download help

MFRGKPYLWA  CALLALTSSS  FAVDAQSTYD  AIVVGSGPGG  LAAAEYLSRD  PSVSVLIVEA60
GHKSLAATGG  TVSPDYAKGK  GLTTFDIPGE  YEGTIYNPNY  SQYRVDWISD  TYLWLGKLVG120
GCSSINAALY  FRPPNNYVTN  MQWPFTAESM  VAKMDENERL  HGHTDKPSPD  GVWYTQEGYK180
VVSKAFLAQG  YSEKTLNDVA  ARNNKSKTFG  HAPFAFKNSR  RDTPANAFWG  AMSKRPNVKL240
VTDTKVDYVL  HSAGKAIGVV  YGGTKAQLSS  RGTVIMAAGA  LGTPKVLIQS  GIGPADQLNL300
LKGNSQFPGL  AQGDLITNPY  VGRNLFDTNV  VFASFSHPDM  KTFRYTDHPS  WAIDQYMNKN360
GTGPWSSSGP  VLIGYENFVV  QGRPYEFQTT  VLTHGFGEFS  KRNDALALAL  YVNNPEGRAA420
SGFDSNGAWH  AFKEGTPFFG  TNRDLVAMQQ  YAQHVVSAMT  AQGATFLSGG  SDAAGVANWV480
SANAGQATQH  FGGSCFASSD  SSAGSKRCAD  NKLRVLGTSN  IFVADASAMR  EGTVNPFGFI540
TYIGREAAGQ  AASYISAGGV  GSAWAVQKPA  QGASCSTIEE  NVDYAGNDVG  NARSSSAEGC600
CSICQTTGAC  KAYTWTNYNG  GTCWLKSAKG  AASTNTGARS  ATLN644

Enzyme Prediction      help

EC 1.1.99.18:3

CAZyme Signature Domains help

Created with Snap3264961281611932252572893223543864184504835155475796118542AA3
Family Start End Evalue family coverage
AA3 20 549 1e-105 0.9744525547445255

CDD Domains      download full data without filtering help

Created with Snap32649612816119322525728932235438641845048351554757961122557BetA25327PRK02106574641APPLE_Factor_XI_like111327GMC_oxred_N582626PAN_4
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
225186 BetA 1.28e-32 22 557 1 539
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000 PRK02106 1.29e-20 25 327 2 298
choline dehydrogenase; Validated
238533 APPLE_Factor_XI_like 1.09e-13 574 641 4 70
Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
366272 GMC_oxred_N 1.91e-12 111 327 19 215
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
405052 PAN_4 7.78e-10 582 626 1 51
PAN domain.

CAZyme Hits      help

Created with Snap3264961281611932252572893223543864184504835155475796111644UIZ20744.1|AA3_128643AIG55859.1|AA3_122641AIG55821.1|AA3_113533AIG55589.1|AA3_18546AIG55820.1|AA3_1
Hit ID E-Value Query Start Query End Hit Start Hit End
UIZ20744.1|AA3_1 0.0 1 644 1 638
AIG55859.1|AA3_1 8.16e-162 28 643 23 632
AIG55821.1|AA3_1 5.40e-148 22 641 17 630
AIG55589.1|AA3_1 1.59e-144 13 533 7 526
AIG55820.1|AA3_1 2.19e-127 8 546 4 544

PDB Hits      download full data without filtering help

Created with Snap326496128161193225257289322354386418450483515547579611293431NAA_A293431KDG_A283604QI4_A283604QI6_A285484QI7_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
1NAA_A 5.22e-43 29 343 3 318
Chain A, Cellobiose dehydrogenase [Phanerodontia chrysosporium],1NAA_B Chain B, Cellobiose dehydrogenase [Phanerodontia chrysosporium]
1KDG_A 5.62e-43 29 343 8 323
Chain A, cellobiose dehydrogenase [Phanerodontia chrysosporium],1KDG_B Chain B, cellobiose dehydrogenase [Phanerodontia chrysosporium]
4QI4_A 1.14e-41 28 360 7 339
Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides],4QI5_A Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
4QI6_A 6.56e-41 28 360 229 561
Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
4QI7_A 4.48e-36 28 548 229 760
Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A],4QI7_B Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A]

Swiss-Prot Hits      download full data without filtering help

Created with Snap32649612816119322525728932235438641845048351554757961117343sp|Q01738|CDH_PHACH29327sp|Q00593|ALKJ_PSEOL6298sp|A0A3B1EFP9|STR4_STRTC29394sp|A7MFA8|BETA_CROS829363sp|A9AMZ9|BETA_BURM1
Hit ID E-Value Query Start Query End Hit Start Hit End Description
sp|Q01738|CDH_PHACH 1.46e-41 17 343 218 550
Cellobiose dehydrogenase OS=Phanerodontia chrysosporium OX=2822231 GN=CDH-1 PE=1 SV=1
sp|Q00593|ALKJ_PSEOL 6.15e-14 29 327 2 293
Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans OX=301 GN=alkJ PE=1 SV=1
sp|A0A3B1EFP9|STR4_STRTC 6.88e-14 6 298 11 322
Dehydrogenase str4 OS=Strobilurus tenacellus OX=41251 GN=str4 PE=1 SV=1
sp|A7MFA8|BETA_CROS8 7.62e-13 29 394 3 371
Oxygen-dependent choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC BAA-894) OX=290339 GN=betA PE=3 SV=1
sp|A9AMZ9|BETA_BURM1 1.35e-12 29 363 6 339
Oxygen-dependent choline dehydrogenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) OX=395019 GN=betA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000596 0.999386 CS pos: 22-23. Pr: 0.9668

TMHMM  Annotations      help

There is no transmembrane helices in PHYCI_101913T0-p1.