logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: PHPALM_9981-t46_1-p1

You are here: Home > Sequence: PHPALM_9981-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_9981-t46_1-p1
CAZy Family PL3
CAZyme Description Glycoside hydrolase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
253 27849.67 6.3266
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.37:8

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH3 70 250 6.1e-37 0.6990740740740741

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
178629 PLN03080 7.60e-51 1 246 1 259
Probable beta-xylosidase; Provisional
224389 BglX 2.10e-24 97 245 80 206
Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
395747 Glyco_hydro_3 1.64e-19 80 244 70 211
Glycosyl hydrolase family 3 N terminal domain.
185053 PRK15098 5.47e-13 13 253 5 255
beta-glucosidase BglX.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
5.80e-115 17 250 21 253
1.03e-79 118 250 1 133
2.68e-51 26 245 48 264
6.28e-51 24 250 47 270
3.26e-49 3 250 16 265

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.72e-40 34 250 16 231
Chain A, xylan 1,4-beta-xylosidase [Phanerodontia chrysosporium]
1.31e-39 34 250 16 231
Chain A, xylan 1,4-beta-xylosidase [Phanerodontia chrysosporium]
1.02e-26 34 250 43 254
Chain A, BETA-XYLOSIDASE [Trichoderma reesei],5A7M_B Chain B, BETA-XYLOSIDASE [Trichoderma reesei]
1.02e-26 34 250 43 254
Chain A, BETA-XYLOSIDASE [Trichoderma reesei],5AE6_B Chain B, BETA-XYLOSIDASE [Trichoderma reesei]
8.73e-26 16 250 26 252
GH3 exo-beta-xylosidase (XlnD) [Aspergillus nidulans FGSC A4],6Q7I_B GH3 exo-beta-xylosidase (XlnD) [Aspergillus nidulans FGSC A4],6Q7J_A Chain A, Exo-1,4-beta-xylosidase xlnD [Aspergillus nidulans FGSC A4],6Q7J_B Chain B, Exo-1,4-beta-xylosidase xlnD [Aspergillus nidulans FGSC A4]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.95e-49 33 250 49 263
Beta-D-xylosidase 3 OS=Arabidopsis thaliana OX=3702 GN=BXL3 PE=1 SV=1
9.11e-48 26 250 47 268
Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia OX=36902 GN=Xyl2 PE=2 SV=1
2.47e-47 1 250 7 256
Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana OX=3702 GN=BXL5 PE=2 SV=2
6.02e-46 24 250 50 273
Beta-D-xylosidase 4 OS=Arabidopsis thaliana OX=3702 GN=BXL4 PE=1 SV=1
4.83e-44 31 250 52 268
Beta-xylosidase/alpha-L-arabinofuranosidase 1 (Fragment) OS=Medicago sativa subsp. varia OX=36902 GN=Xyl1 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.121999 0.877971 CS pos: 22-23. Pr: 0.7273

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_9981-t46_1-p1.