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CAZyme Information: PHPALM_9872-t46_1-p1

You are here: Home > Sequence: PHPALM_9872-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_9872-t46_1-p1
CAZy Family PL1|PL1
CAZyme Description Hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
446 48038.31 5.9173
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 123 316 5.6e-76 0.9946524064171123

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 9.94e-31 122 318 2 190
Amb_all domain.
226384 PelB 1.67e-10 94 321 33 280
Pectate lyase [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.08e-200 1 446 1 441
1.25e-199 1 446 1 441
4.77e-192 1 332 1 331
7.38e-184 8 380 8 380
1.05e-183 8 380 8 380

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.78e-70 25 358 5 321
Pectin Lyase A [Aspergillus niger]
4.96e-70 24 356 4 320
Pectin Lyase B [Aspergillus niger]
1.95e-69 25 358 5 321
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.03e-91 8 382 8 378
Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
2.03e-91 8 382 8 378
Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
9.59e-86 8 382 7 379
Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
9.59e-86 8 382 7 379
Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
2.99e-85 1 356 1 339
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000218 0.999753 CS pos: 21-22. Pr: 0.9750

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_9872-t46_1-p1.