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CAZyme Information: PHPALM_7857-t46_1-p1

You are here: Home > Sequence: PHPALM_7857-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_7857-t46_1-p1
CAZy Family GT71
CAZyme Description Polygalacturonase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
361 37294.01 9.9271
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.15:10

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 45 361 3.1e-69 0.96

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 3.77e-70 48 361 1 321
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
227721 Pgu1 1.15e-21 88 288 188 404
Polygalacturonase [Carbohydrate transport and metabolism].
215426 PLN02793 5.34e-21 47 321 79 368
Probable polygalacturonase
177865 PLN02218 9.37e-20 47 330 94 391
polygalacturonase ADPG
215540 PLN03010 5.68e-19 53 361 80 386
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.62e-235 1 361 1 361
4.64e-235 1 361 1 361
2.20e-233 1 361 1 361
2.73e-227 1 361 1 361
4.19e-215 1 361 1 361

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.33e-72 28 361 6 344
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
2.33e-72 28 361 6 344
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
3.25e-70 32 361 2 336
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
1.98e-69 30 361 1 339
Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus]
8.02e-68 31 361 1 336
Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_B Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_C Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_D Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_E Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_F Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.10e-75 12 361 14 368
Probable endopolygalacturonase I OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pgaI PE=3 SV=1
9.42e-74 11 361 8 367
Probable endopolygalacturonase I OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pgaI PE=3 SV=1
9.42e-74 11 361 8 367
Endopolygalacturonase I OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pgaI PE=1 SV=1
9.42e-74 11 361 8 367
Endopolygalacturonase B OS=Aspergillus flavus (strain ATCC MYA-384 / AF70) OX=1392242 GN=pgaB PE=2 SV=2
5.88e-72 4 361 5 367
Polygalacturonase OS=Penicillium digitatum OX=36651 GN=PG1 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000221 0.999749 CS pos: 20-21. Pr: 0.9822

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_7857-t46_1-p1.