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CAZyme Information: PHPALM_6034-t46_1-p1

You are here: Home > Sequence: PHPALM_6034-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_6034-t46_1-p1
CAZy Family GT48
CAZyme Description Pectinesterase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
357 38608.67 4.1155
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.1.1.11:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
CE8 59 333 2.3e-75 0.9236111111111112

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
178113 PLN02497 4.32e-47 49 332 31 306
probable pectinesterase
395871 Pectinesterase 7.58e-45 52 326 2 272
Pectinesterase.
215117 PLN02176 2.77e-44 49 335 38 313
putative pectinesterase
215367 PLN02682 3.64e-44 48 350 67 366
pectinesterase family protein
178051 PLN02432 4.41e-44 48 335 9 275
putative pectinesterase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
4.64e-154 38 357 21 338
1.05e-151 1 357 1 343
3.23e-151 38 357 23 344
9.22e-151 38 357 23 344
1.29e-146 34 357 17 338

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.47e-63 43 356 2 299
Crystal Structure of the Pectin Methylesterase from Aspergillus niger in Deglycosylated Form [Aspergillus niger ATCC 1015]
1.47e-63 43 356 2 299
Crystal Structure of the Pectin Methylesterase from Aspergillus niger in Penultimately Deglycosylated Form (N-acetylglucosamine Stub at Asn84) [Aspergillus niger ATCC 1015]
3.59e-35 52 326 9 279
Pectin methylesterase from Carrot [Daucus carota]
6.93e-30 49 328 3 277
Chain A, Pectinesterase 1 [Solanum lycopersicum]
2.88e-10 89 315 74 350
The structure of rice weevil pectin methyl esterase [Sitophilus oryzae]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.92e-84 43 357 19 331
Pectinesterase OS=Aspergillus aculeatus OX=5053 GN=pme1 PE=2 SV=1
2.21e-82 43 357 19 330
Pectinesterase OS=Aspergillus niger OX=5061 GN=pme1 PE=1 SV=1
1.82e-67 44 356 28 324
Probable pectinesterase A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=pmeA PE=3 SV=1
1.82e-67 44 356 28 324
Probable pectinesterase A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pmeA PE=3 SV=1
4.51e-65 44 356 28 324
Probable pectinesterase A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pmeA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000187 0.999767 CS pos: 20-21. Pr: 0.9831

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_6034-t46_1-p1.