CAZyme Information: PHPALM_6022-t46_1-p1

Basic Information

• Species: Phytophthora palmivora
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
• CAZyme ID: PHPALM_6022-t46_1-p1
• CAZy Family: GT48
• CAZyme Description: Pectin lyase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
799		85822.10	4.9207

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9	28185	N/A	3511	24674

• Gene Location: location=NCKW01003400:6975-9869(+)

Full Sequence      

MQIAVVMVLLTAQAIVQALTIGEAPGFAAGTTGGGTATPDYPKTIDDLKTLLKDDQPRVV
VLDKEFDFLGTEGTTTETGCRPKSNTDCLDKKNGFKGQDVILFPGDTTLTNTGGCDQQVK
VEVTYDNAAKNALVVGSNKTLRGVGQKGVLKGKGLWLDGDNIIIQNVHITELNPQYVWGG
DAIYLQGTNNRAMKNIWLDHVKISRIGRQMFTSGFAGVESLTISNSDFDGRTDWSSSCDG
RHYWGFILDGTTTRVSFLNNYIHSTSGCSPKTVGASSESANVVAHIANNYWANNSGHSFE
PGANAFVLAEGNYFKDTAEPVQTDVDKSSISTTDDCSSSLGRSCPTNTVEKSGKFDSVNG
ERAMEKVKEFKEISGFTPGAAAKLYKEFDFLGSNGSTTEQGCRPKIMEQCVAEHNGFKGQ
DVILREGDTTFTQTGGCDQAVGVEVTYDNAAKNPLVVKGNKTLRGIGQAGVLKGRGLWLN
GDNIIIQNIHITELNSQYVWGGDAIYMQGTESGSMKKIWLDHVKISRVGRQMLVIAFGGA
ESLTISNSDFDGSTDWSSSCDGRHYWAFIIGGEPTHVTFVNNYVHSTSGRSPKIVSEMGT
NPIVVGHFVNNYWADNSGHSFEPGLNAFVLAEGNYFKDTKEPILADDKATVFTAADSNDC
SSYLGRACVSNVVENSGKFDSVNGERAMEKVKEFKEIAEYTPSKASPLSESLDNFGVGVL
QSPLDSSTQGSKNESSKQDSLAQGSEQGGSKEDNPTQGSGNESSGDGSPIQHNVEQGSIG
QDADPSKCTPKRRVMELQA

Enzyme Prediction     

EC	4.2.2.10:1	4.2.2.10:1

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL1	123	316	1e-80	0.9893048128342246
PL1	445	638	1.4e-78	0.9893048128342246

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
214765	Amb_all	4.83e-35	120	314	1	186	Amb_all domain.
214765	Amb_all	3.38e-31	445	640	2	190	Amb_all domain.
226384	PelB	9.59e-14	100	370	78	334	Pectate lyase [Carbohydrate transport and metabolism].
226384	PelB	1.43e-12	460	694	102	334	Pectate lyase [Carbohydrate transport and metabolism].
366158	Pec_lyase_C	3.72e-08	126	314	23	211	Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AHX74068.1|PL1_4	7.19e-150	17	386	20	389
ADN18834.1|PL1_4	1.28e-147	17	386	20	389
ADN18833.1|PL1_4	1.77e-141	17	386	20	389
AHX74069.1|PL1_4	2.69e-134	17	389	20	396
ADN18835.1|PL1_4	1.06e-133	17	389	20	396

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1QCX_A	3.66e-77	21	355	4	322	Pectin Lyase B [Aspergillus niger]
1IDK_A	2.83e-74	22	355	5	321	Pectin Lyase A [Aspergillus niger]
1IDJ_A	1.08e-72	22	355	5	321	Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q8NJK6|PELF_ASPNG	1.67e-90	22	353	26	342	Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
sp|A2R6A1|PELF_ASPNC	1.67e-90	22	353	26	342	Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
sp|Q0CZD4|PELF2_ASPTN	7.19e-90	21	357	24	343	Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
sp|Q2UJA7|PELF_ASPOR	1.82e-87	9	355	7	343	Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
sp|B8N316|PELF_ASPFN	1.82e-87	9	355	7	343	Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000185	0.999797	CS pos: 18-19. Pr: 0.9762

TMHMM  Annotations     

There is no transmembrane helices in PHPALM_6022-t46_1-p1.