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CAZyme Information: PHPALM_573-t46_1-p1

You are here: Home > Sequence: PHPALM_573-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_573-t46_1-p1
CAZy Family GT41
CAZyme Description Choline dehydrogenase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
608 NCKW01000078|CGC1 66550.20 7.1283
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PHPALM_573-t46_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 108 595 5e-93 0.8767605633802817

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
225186 BetA 1.32e-75 107 597 78 538
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000 PRK02106 4.15e-69 119 593 86 532
choline dehydrogenase; Validated
366272 GMC_oxred_N 2.77e-27 118 341 24 218
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
398739 GMC_oxred_C 2.78e-25 435 588 1 143
GMC oxidoreductase. This domain found associated with pfam00732.
215420 PLN02785 4.16e-11 251 594 234 579
Protein HOTHEAD

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 4 605 23 652
4.15e-55 119 597 83 529
1.62e-44 119 596 110 559
2.09e-44 119 592 127 600
4.32e-42 148 593 3 417

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.58e-43 119 592 85 560
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
7.62e-43 119 592 85 560
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
7.62e-43 119 592 85 560
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
7.62e-43 119 592 85 560
Chain A, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
9.34e-43 119 592 101 576
Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_B Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_C Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_D Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_E Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_F Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.17e-44 119 593 124 597
Fatty acid photodecarboxylase, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=FAP PE=1 SV=1
1.64e-42 119 596 83 534
Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=betA PE=3 SV=1
2.25e-42 119 596 83 534
Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=betA PE=3 SV=1
4.81e-42 119 597 126 576
Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2
9.31e-42 119 592 161 636
Fatty acid photodecarboxylase, chloroplastic OS=Chlorella variabilis OX=554065 GN=FAP PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.998907 0.001111

TMHMM  Annotations      download full data without filtering help

Start End
25 47