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CAZyme Information: PHPALM_5549-t46_1-p1

You are here: Home > Sequence: PHPALM_5549-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_5549-t46_1-p1
CAZy Family GT4
CAZyme Description Hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
216 23733.38 4.0534
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PHPALM_5549-t46_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 12 199 3.6e-61 0.710204081632653

CDD Domains      help

PHPALM_5549-t46_1-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.01e-141 1 199 1 200
1.01e-141 1 199 1 200
1.43e-141 1 199 1 200
2.16e-130 16 187 1 172
9.28e-116 16 187 1 172

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.81e-12 82 197 43 172
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

PHPALM_5549-t46_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000200 0.999762 CS pos: 22-23. Pr: 0.9800

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_5549-t46_1-p1.