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CAZyme Information: PHPALM_4880-t46_1-p1

You are here: Home > Sequence: PHPALM_4880-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_4880-t46_1-p1
CAZy Family GT22
CAZyme Description Chitin-binding protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
254 27263.25 6.1315
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PHPALM_4880-t46_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA16 25 192 1.9e-22 0.9880239520958084

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
397269 LPMO_10 3.68e-06 93 193 85 186
Lytic polysaccharide mono-oxygenase, cellulose-degrading. This domain is found associated with a wide variety of cellulose binding domains. This is a family of two very closely related proteins that together act as both a C1- and a C4-oxidising lytic polysaccharide mono-oxygenase, degrading cellulose. This domain is also found in baculoviral spheroidins and spindolins, protein of unknown function.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.63e-15 9 198 5 195
3.92e-14 18 198 14 195
4.36e-14 20 200 13 193
4.36e-14 20 200 13 193
1.77e-13 17 208 9 198

PDB Hits      help

PHPALM_4880-t46_1-p1 has no PDB hit.

Swiss-Prot Hits      help

PHPALM_4880-t46_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000480 0.999465 CS pos: 24-25. Pr: 0.9510

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_4880-t46_1-p1.