logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: PHPALM_31983-t46_1-p1

You are here: Home > Sequence: PHPALM_31983-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_31983-t46_1-p1
CAZy Family GH5
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
183 19806.39 4.8832
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PHPALM_31983-t46_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 10 179 8.1e-57 0.6816326530612244

CDD Domains      help

PHPALM_31983-t46_1-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
4.15e-109 5 180 2 177
6.43e-107 5 179 2 176
6.43e-107 5 179 2 176
1.30e-106 5 179 2 176
1.39e-106 1 179 1 178

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.35e-26 23 179 1 164
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

PHPALM_31983-t46_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000209 0.999775 CS pos: 22-23. Pr: 0.9786

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_31983-t46_1-p1.