logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: PHPALM_30892-t46_1-p1

You are here: Home > Sequence: PHPALM_30892-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_30892-t46_1-p1
CAZy Family GH5
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
267 29038.27 6.2872
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PHPALM_30892-t46_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 10 250 2.7e-71 0.9224489795918367

CDD Domains      help

PHPALM_30892-t46_1-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.54e-146 1 208 1 207
6.28e-146 1 208 1 207
8.60e-146 1 207 1 206
8.50e-144 1 208 1 207
2.43e-143 1 208 1 207

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.49e-16 23 192 1 171
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

PHPALM_30892-t46_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000272 0.999728 CS pos: 22-23. Pr: 0.9788

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_30892-t46_1-p1.