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CAZyme Information: PHPALM_29842-t46_1-p1

You are here: Home > Sequence: PHPALM_29842-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_29842-t46_1-p1
CAZy Family GH47
CAZyme Description Pectin lyase-8
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
438 45997.44 4.1017
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 127 280 3.4e-68 0.786096256684492

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 8.35e-22 127 277 4 150
Amb_all domain.
226384 PelB 2.13e-05 137 278 97 236
Pectate lyase [Carbohydrate transport and metabolism].
366158 Pec_lyase_C 2.28e-04 135 278 28 176
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.68e-235 1 373 1 406
5.02e-148 1 365 1 398
5.02e-148 1 365 1 398
2.87e-147 1 365 1 398
1.37e-140 18 365 52 432

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
8.55e-61 24 317 4 313
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
1.69e-60 24 317 4 313
Pectin Lyase A [Aspergillus niger]
3.85e-58 25 322 5 319
Pectin Lyase B [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.41e-72 1 322 1 341
Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
2.41e-72 1 322 1 341
Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
2.25e-69 25 333 24 344
Probable pectin lyase F OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelF PE=3 SV=1
1.30e-68 29 331 29 346
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
2.90e-67 1 331 1 348
Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.002450 0.997523 CS pos: 21-22. Pr: 0.9718

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_29842-t46_1-p1.