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CAZyme Information: PHPALM_29785-t46_1-p1

You are here: Home > Sequence: PHPALM_29785-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_29785-t46_1-p1
CAZy Family GH47
CAZyme Description Pectate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
473 49506.99 4.1145
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 126 314 2.9e-80 0.983957219251337

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 2.64e-28 126 312 4 185
Amb_all domain.
226384 PelB 3.53e-08 141 319 102 279
Pectate lyase [Carbohydrate transport and metabolism].
366158 Pec_lyase_C 4.07e-07 134 311 28 209
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
6.43e-273 1 408 1 406
5.62e-171 1 400 1 398
5.62e-171 1 400 1 398
3.22e-170 1 400 1 398
9.30e-163 18 400 52 432

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.25e-79 24 352 4 313
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
6.31e-79 24 352 4 313
Pectin Lyase A [Aspergillus niger]
3.87e-77 25 386 5 348
Pectin Lyase B [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.77e-91 24 409 25 392
Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
4.77e-91 24 409 25 392
Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
3.66e-86 4 352 3 333
Pectin lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelB PE=2 SV=1
1.34e-84 29 366 29 346
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
1.71e-84 25 368 24 344
Probable pectin lyase F OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.054742 0.945234 CS pos: 21-22. Pr: 0.8249

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_29785-t46_1-p1.