CAZyme Information: PHPALM_29164-t46_1-p1

Basic Information

• Species: Phytophthora palmivora
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
• CAZyme ID: PHPALM_29164-t46_1-p1
• CAZy Family: GH43
• CAZyme Description: Glycoside hydrolase family 17-like protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
570		59706.75	3.9695

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9	28185	N/A	3511	24674

• Gene Location: location=NCKW01015798:4670-6452(+)

Full Sequence      

MKFFAPLVVGVIAFLSSQVDANGVCYDPNHGTGMDAASVQADMQTIASHGFDSVRTFISA
FGGVEIGPIIAAAGLKAMLGVPYPQGDYKDQMAAAIKAAQAGGVYAIMADMQTIASHGFD
SVRTFISAFGGVEIGPIIAAAGLKAMLGVPYPQGDYKDQMAAAIKAAQAGGVYAIMVGNE
NLAGASSVPGDMISVIQYIKSQVPSGVLVGTVQRNTEAIEHNSVSGWWDLISACDIFGVN
AHPYFTPNTVADNAIQVLNNQWQTMAGTYGSKLILTETGWPSGGTLMGNVGSVAGAELFY
NAYQQWSSSMSEKFYFQMFDTPYRTEDYEQTFGVVTSNGQNKFSMSAQVSVSIGQTNQQD
NQQNNQQQQQTPSTDAPTYQQQTPTTDAPTYQQQTPATNTPTQAPTEAPTQPPTEAPTQP
PTEAPTQPPTEAPTEVPTQLPTEAPTAVPTPEATLVPTETPAIYQSSGSGDYNITSGSNE
IQLGSASTSTEASEASDNEQQTKKSSKTGTTTQQTEQTTQQTTQNTTPTGTNSQAQQQDD
VQQANTQSGGGGDGSAMIFGIAAAACVALV

Enzyme Prediction     

No EC number prediction in PHPALM_29164-t46_1-p1.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH17	139	346	9.2e-18	0.8553054662379421

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
227625	Scw11	3.96e-20	106	338	64	304	Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism].
411345	gliding_GltJ	8.16e-09	372	462	399	489	adventurous gliding motility protein GltJ. Adventurous gliding motility protein GltJ, also known as AgmX, occurs in delta-proteobacteria such as Myxococcus xanthus.
411345	gliding_GltJ	1.09e-08	372	462	416	508	adventurous gliding motility protein GltJ. Adventurous gliding motility protein GltJ, also known as AgmX, occurs in delta-proteobacteria such as Myxococcus xanthus.
223021	PHA03247	2.61e-07	377	462	2866	2950	large tegument protein UL36; Provisional
237030	kgd	4.39e-07	372	460	43	141	multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ24978.1|GH17	1.02e-100	1	342	1	274
UPT50359.1|GH17	7.94e-23	110	334	48	276
AIG55417.1|GH17	2.65e-22	119	347	51	282
AIG55724.1|GH17	3.16e-22	120	353	64	321
UIZ21797.1|GH17	2.18e-20	107	342	590	829

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
4WTP_A	1.14e-07	140	342	89	289	Crystal structure of glycoside hydrolase family 17 beta-1,3-glucanosyltransferase from Rhizomucor miehei [Rhizomucor miehei CAU432]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q04951|SCW10_YEAST	6.62e-07	118	338	165	389	Probable family 17 glucosidase SCW10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SCW10 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000280	0.999706	CS pos: 21-22. Pr: 0.9794

TMHMM  Annotations     

There is no transmembrane helices in PHPALM_29164-t46_1-p1.