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CAZyme Information: PHPALM_29058-t46_1-p1

You are here: Home > Sequence: PHPALM_29058-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_29058-t46_1-p1
CAZy Family GH38
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
375 38379.56 4.2143
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PHPALM_29058-t46_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 10 273 1.9e-73 0.9714285714285714

CDD Domains      help

PHPALM_29058-t46_1-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
5.04e-129 1 374 1 378
5.04e-129 1 374 1 378
7.14e-129 1 374 1 378
2.88e-128 1 374 1 378
3.06e-100 6 210 9 212

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.04e-12 98 193 70 170
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

PHPALM_29058-t46_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000205 0.999773 CS pos: 20-21. Pr: 0.9822

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_29058-t46_1-p1.