CAZyme Information: PHPALM_28666-t46_1-p1

Basic Information

• Species: Phytophthora palmivora
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
• CAZyme ID: PHPALM_28666-t46_1-p1
• CAZy Family: GH32
• CAZyme Description: Pectate lyase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
977		102445.27	4.0499

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9	28185	N/A	3511	24674

• Gene Location: location=NCKW01015630:2250-5183(-)

Full Sequence      

MVKIRAATITSVVVLLSTLSATLADDSWGDTAQYSNESPVTQEHQSTDAPAWDTSKKSDD
EKTESSENDQKFYNFQKSDVDQKSDDQNSNDGTTDAPTNSWTPAPQGPSGNNWNQTPSSW
ESSGKSEDNNDQDDKSDTSPSSGDAQNSWTQVPTMSESSETSYGDNSDDTDTNESSKSTE
TSESNEDSWKQESVTSSGGSQHSGGTTPSTGTGGGGGNSTPSHGGRNVPDGTWPTSTGSV
KFMEPRIIKAGEVFDGKMQTFDRSDITCSEGEGQKDTAVFLVEAGGTLKNAIIGKNQKEG
VHCDDHDCTIENVWWDDVCEDALSIKGGSASSVTTVTNCGARSASDKVVQHNGQGTVNID
GFYAENFGKLYRSCGTCGDKARKVTVKNVYAVDPLVSLITVNKNYGDEAILSNIWIKTSD
GSNEVKVCQWSQGGDTPSNLGDGPSPPLCQYSESDVHINQDVSQAGGSSPTAPTKSTDGS
DISQTQWTSSTESSGNGDGDETTDDAPVPSSAGSQTSQEPVSSSESSGNDDDEDEEQSSS
SGGSQTSGGTTPSTGSQTTDGGSGGGSITPSSGGGKVPDGTWPTSTGTVQFAEVKVIKAG
EVFDGKMQTFERSDVTCEGQTESGGNTAVFQLEPGATLKNAIIGKNQMEGVHCDKHDCTI
DNVWWDDVCEDALSIKGGTASSVSKVIGGGARSADDKVIQHNGYGTVKIDGFYGEDISKL
YRSCGTCGDRPKKVSVANVYIVNPENAIVTVNKNWGDEATLSNIWIKSTGDKVKICQWSQ
GNADGEPSMLGDGPSPPLCQYSESDVHINGDVSQAGGSTPSTGSTSVPVRDGSSVEQASP
DESSSNDGNDGASQNQWTRSSSTSSKTSSDDNDNDDGGDNDTTDTSTTSWGGSSKEAPSI
SSDGNNGDDKRKKDDDKEKTEKSDDDNPGSAQQEETTSDDQSVMQSDVAGEAETNVDPAT
NQATKLKKCNVRRRNRD

Enzyme Prediction     

EC	4.2.2.2:4	4.2.2.2:4

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL3	585	781	6e-78	0.9948453608247423
PL3	236	431	3.4e-75	0.9845360824742269

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
397360	Pectate_lyase	2.45e-83	580	785	2	199	Pectate lyase.
397360	Pectate_lyase	2.81e-80	231	433	2	195	Pectate lyase.
380146	MSCRAMM_SdrC	3.06e-04	25	188	704	868	MSCRAMM family adhesin SdrC. Features of this protein family include a YSIRK-type signal peptide at the N-terminus and a variable-length C-terminal region of Ser-Asp (SD) repeats followed by an LPXTG motif for surface immobilization by sortase.
380146	MSCRAMM_SdrC	3.91e-04	10	188	717	894	MSCRAMM family adhesin SdrC. Features of this protein family include a YSIRK-type signal peptide at the N-terminus and a variable-length C-terminal region of Ser-Asp (SD) repeats followed by an LPXTG motif for surface immobilization by sortase.
236304	PRK08581	6.93e-04	19	173	119	287	amidase domain-containing protein.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ADN18841.1|PL3_2	3.59e-149	577	825	21	269
ADN18837.1|PL3_2	1.20e-104	577	806	31	258
ADN18840.1|PL3_2	5.62e-100	577	806	31	258
ADN18839.1|PL3_2	3.80e-88	577	808	23	275
AHX74070.1|PL3_2	3.80e-88	577	808	23	275

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1EE6_A	3.11e-23	248	375	11	135	Crystal Structure Of Pectate Lyase From Bacillus Sp. Strain Ksm-P15. [Bacillus sp. KSM-P15]
3B90_A	5.40e-22	609	806	8	223	Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B90_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]
3B4N_A	5.12e-21	609	806	126	341	Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B4N_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_A Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]
4EW9_A	2.20e-19	584	725	2	138	The liganded structure of C. bescii family 3 pectate lyase [Caldicellulosiruptor bescii DSM 6725],4EW9_B The liganded structure of C. bescii family 3 pectate lyase [Caldicellulosiruptor bescii DSM 6725]
3T9G_A	2.26e-19	584	725	3	139	The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii [Caldicellulosiruptor bescii],3T9G_B The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii [Caldicellulosiruptor bescii]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q0CJ49|PLYD_ASPTN	4.96e-55	234	453	35	248	Probable pectate lyase D OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyD PE=3 SV=1
sp|Q4WGV9|PLYD_ASPFU	6.00e-54	234	453	23	237	Probable pectate lyase D OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=plyD PE=3 SV=1
sp|B0YB89|PLYD_ASPFC	6.00e-54	234	453	23	237	Probable pectate lyase D OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=plyD PE=3 SV=1
sp|A1DCY5|PLYD_NEOFI	2.04e-53	234	453	22	236	Probable pectate lyase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyD PE=3 SV=1
sp|Q0CJ20|PLYG_ASPTN	2.45e-53	234	453	28	241	Probable pectate lyase G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyG PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000335	0.999633	CS pos: 24-25. Pr: 0.9760

TMHMM  Annotations     

There is no transmembrane helices in PHPALM_28666-t46_1-p1.