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CAZyme Information: PHPALM_27690-t46_1-p1

You are here: Home > Sequence: PHPALM_27690-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_27690-t46_1-p1
CAZy Family GH30
CAZyme Description Pectinesterase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
194 20487.21 6.4489
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.1.1.11:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
CE8 44 194 7.3e-31 0.4895833333333333

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
177848 PLN02197 2.18e-14 44 193 284 424
pectinesterase
178372 PLN02773 1.68e-13 29 194 1 163
pectinesterase
178051 PLN02432 2.65e-13 31 194 9 154
putative pectinesterase
215357 PLN02665 3.17e-13 44 193 77 219
pectinesterase family protein
215173 PLN02304 1.40e-12 35 194 77 228
probable pectinesterase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
7.55e-117 1 194 1 194
8.70e-104 1 194 1 194
1.58e-88 6 194 7 199
1.58e-88 6 194 7 199
1.68e-82 1 194 1 198

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.99e-26 25 194 1 159
Crystal Structure of the Pectin Methylesterase from Aspergillus niger in Deglycosylated Form [Aspergillus niger ATCC 1015]
2.78e-26 25 194 1 159
Crystal Structure of the Pectin Methylesterase from Aspergillus niger in Penultimately Deglycosylated Form (N-acetylglucosamine Stub at Asn84) [Aspergillus niger ATCC 1015]
3.45e-10 44 193 16 154
Pectin methylesterase from Carrot [Daucus carota]
6.20e-08 44 193 12 150
Chain A, Pectinesterase 1 [Solanum lycopersicum]
4.14e-07 61 192 64 217
The structure of rice weevil pectin methyl esterase [Sitophilus oryzae]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.04e-35 27 194 20 180
Pectinesterase OS=Aspergillus niger OX=5061 GN=pme1 PE=1 SV=1
1.11e-34 27 194 20 181
Pectinesterase OS=Aspergillus aculeatus OX=5053 GN=pme1 PE=2 SV=1
1.84e-29 27 194 28 184
Probable pectinesterase A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pmeA PE=3 SV=1
1.84e-29 27 194 28 184
Probable pectinesterase A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=pmeA PE=3 SV=1
2.63e-29 25 194 27 185
Pectinesterase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pmeA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000351 0.999605 CS pos: 19-20. Pr: 0.9821

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_27690-t46_1-p1.