CAZyme Information: PHPALM_268-t46_1-p1

Basic Information

• Species: Phytophthora palmivora
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
• CAZyme ID: PHPALM_268-t46_1-p1
• CAZy Family: GH30
• CAZyme Description: Hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
407		44464.67	4.4371

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9	28185	N/A	3511	24674

• Gene Location: location=NCKW01000027:1-1223(-)

Full Sequence      

MLTIRSLAASTLACALLSSHVAADYTVKADAATTVQGTWDGWGTSLCWWANVFGERADIA
DALFTLNETVTLDGATGGIPGLGFNIARYNIGGSSSNVVDDSGTEVAMKTSENMPAFKFM
ESFWLDWMSKDPASTSWNWKADAKQRAMLTLANARGANVLEAFSNSPPWWMTNNRATAGG
DNGKKDNLQDWNHDEFVLYLATVVAKAKSDWGIKFTFVEPFNEPSETWWEFPGKQEGCHF
SVDTQQTVLPLLRKQLDALELQDVAIATSDENSATVALATLNTMSNNADVMGAFEKVNTH
GYEGLEAYRGKDRGGLKDLANKLTKSLWDSEYGEKDATGLTMAESIGLDINEMGVSGFVY
WQALDSGGWGLIQSNPGDNWIGTPNPKYYVMAQYSRHIRAGMTILAT

Enzyme Prediction     

EC	3.2.1.164:3

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH30	34	407	9e-116	0.8026315789473685

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
405300	Glyco_hydr_30_2	1.11e-16	26	237	3	195	O-Glycosyl hydrolase family 30.
227807	XynC	1.32e-04	166	405	124	343	O-Glycosyl hydrolase [Cell wall/membrane/envelope biogenesis].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ26121.1|GH30_5	1.64e-194	3	407	4	411
ATB44315.1|GH30_5	3.76e-138	8	406	15	409
QRN98147.1|GH30_5	1.44e-135	23	405	33	409
BDI32354.1|GH30_5	1.44e-134	4	405	2	403
ADO68177.1|GH30_5	4.65e-134	23	405	33	409

PDB Hits     

PHPALM_268-t46_1-p1 has no PDB hit.

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q76FP5|6GAL_HYPRU	1.42e-111	5	407	2	387	Endo-beta-1,6-galactanase OS=Hypocrea rufa OX=5547 GN=6GAL PE=1 SV=1
sp|A0A401ETL2|EXGAL_BIFL2	3.04e-16	25	365	30	445	Exo-beta-1,6-galactobiohydrolase OS=Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) OX=565042 GN=bl1,6Gal PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.003629	0.996353	CS pos: 13-14. Pr: 0.2481

TMHMM  Annotations     

There is no transmembrane helices in PHPALM_268-t46_1-p1.