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CAZyme Information: PHPALM_223-t46_1-p1

You are here: Home > Sequence: PHPALM_223-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytophthora palmivora
Lineage Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
CAZyme ID PHPALM_223-t46_1-p1
CAZy Family GH3
CAZyme Description Hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
268 29345.27 4.4889
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9 28185 N/A 3511 24674
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in PHPALM_223-t46_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 6 245 9.8e-53 0.9510204081632653

CDD Domains      help

PHPALM_223-t46_1-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.87e-146 1 267 10 267
2.75e-139 1 267 10 267
3.54e-135 1 267 10 267
7.36e-120 1 177 6 185
1.48e-72 6 183 21 193

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.80e-23 13 176 1 170
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

PHPALM_223-t46_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.942933 0.057086

TMHMM  Annotations      help

There is no transmembrane helices in PHPALM_223-t46_1-p1.