CAZyme Information: PHPALM_20654-t46_1-p1

Basic Information

• Species: Phytophthora palmivora
• Lineage: Oomycota; NA; ; Peronosporaceae; Phytophthora; Phytophthora palmivora
• CAZyme ID: PHPALM_20654-t46_1-p1
• CAZy Family: GH3
• CAZyme Description: Hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
947		106105.84	5.9401

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_Ppalmivorasbr112.9	28185	N/A	3511	24674

• Gene Location: location=NCKW01011264:101-4941(+)

Full Sequence      

MRRGLKDAESQQGYESMILFHPTNSWIVKPEVTPLPYGHIMLPDEEDRVSVDAVQSGHAT
PDPTSKFTPMAGWDSTKNYENIAEMRDKFTGPVLDLENHYEGAHDSFVLTRPIWNASHIR
TGLYHGVYSGATGFTYGANSVWQMYEPRSDLLRDSDWYPAQINQNTSGSWRKDIFFEGAT
QIRYVTQPLQNLTTAVLETLEPAREILTSPSDHTGKSVNTYEGTRYISILASQIRDRYYV
YTGHGDSFALQLDNRSGSRSGSARRFYPRGGLYSANSTFNIHESGNGTRIDFIPHSTGGI
DNDRLLRQTMSLWARAFQTRRHAPKRCASMRKSRESFAEVSEVPVKEIAASKLQCYFASQ
SSQVRKDELIRSLVASDPRISGRVLVRHIKRTRGATTSLNASYRSRTLILKEIYDFSVMK
IQAAIASLLSLASTVSGDPTWQDLTITAPRYGRYLTRTTSGKPFFWQADTAWELTHRLNK
TSIDFYLKTRAEQGYNVIQTVVIAELNGTTRANFYGDLPYNNSDTTQPNDAYFELIDWTV
DLAASYGLLVALVPVWGRWVNGGWHGDKESIFNESTAYEFGKYLGDRYPGLPKILGGDSD
CLWARNTSAAMVSYASDPNVDPATLLGPIEDTTDIWVSMYSGVTDAETTHGYEPVILFHP
TAGWISRPENTPEAYAHWMLPKEEFRVTIDGVQSGHAVPEALGGFTPYTTWDSTKNYELI
ATMRDSFTGPVLDLENHYEGAHYNFKTTFPIWNSSEVRTGLYHGVYGGSAGFTYGANSVW
QMYEPAADLLRESDYYSPAASQNASGSWRKDIFFEGATQIQYVTKPLQNFSTDILEQLEP
ARQLLSSPSGYLDTAVNAFEGTRYISVLASENRDHYFVYTGHGDAFSLKLSNGSERSGNA
RWFSPRDGLYYGNSTVTVPASGNNTRVDFTPPSSGGVDNDWLLVLEF

Enzyme Prediction     

EC	-	-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH140	452	942	1.4e-77	0.9757281553398058
GH140	46	280	3.6e-26	0.4854368932038835

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
404153	DUF4038	6.04e-114	452	830	2	320	Protein of unknown function (DUF4038). A family of putative cellulases.
404153	DUF4038	4.31e-36	1	192	163	320	Protein of unknown function (DUF4038). A family of putative cellulases.
403955	Collagen_bind_2	4.62e-13	861	946	12	92	Putative collagen-binding domain of a collagenase. This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. It is the C-terminal part of the Structure 3kzs (information derived from TOPSAN).

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
KAF2142288.1|GH140	9.60e-156	419	946	1	534
KAF3763706.1|GH140	5.23e-144	417	945	3	535
KNX49908.1|GH140	6.82e-77	452	942	22	514
KAE8313632.1|GH140	3.58e-74	408	946	1	508
KAB8276359.1|GH140	1.31e-73	441	946	21	508

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5MSY_A	9.03e-28	441	908	13	413	Glycoside hydrolase BT_1012 [Bacteroides thetaiotaomicron VPI-5482],5MSY_B Glycoside hydrolase BT_1012 [Bacteroides thetaiotaomicron VPI-5482],5MSY_C Glycoside hydrolase BT_1012 [Bacteroides thetaiotaomicron VPI-5482]
3KZS_A	1.75e-25	441	908	13	413	Crystal structure of glycosyl hydrolase family 5 (NP_809925.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution [Bacteroides thetaiotaomicron VPI-5482],3KZS_B Crystal structure of glycosyl hydrolase family 5 (NP_809925.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution [Bacteroides thetaiotaomicron VPI-5482],3KZS_C Crystal structure of glycosyl hydrolase family 5 (NP_809925.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution [Bacteroides thetaiotaomicron VPI-5482],3KZS_D Crystal structure of glycosyl hydrolase family 5 (NP_809925.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution [Bacteroides thetaiotaomicron VPI-5482]

Swiss-Prot Hits     

PHPALM_20654-t46_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000048	0.000000

TMHMM  Annotations     

There is no transmembrane helices in PHPALM_20654-t46_1-p1.